View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13750_high_3 (Length: 235)
Name: NF13750_high_3
Description: NF13750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13750_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 10335978 - 10335892
Alignment:
| Q |
133 |
gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag |
219 |
Q |
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| T |
10335978 |
gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag |
10335892 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 10318734 - 10318648
Alignment:
| Q |
133 |
gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag |
219 |
Q |
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| T |
10318734 |
gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagactgcattgttag |
10318648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10298563 - 10298532
Alignment:
| Q |
1 |
cattagcaaaccctataatgtaaacacataac |
32 |
Q |
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| T |
10298563 |
cattagcaaaccctataatgtaaacacataac |
10298532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10318866 - 10318835
Alignment:
| Q |
1 |
cattagcaaaccctataatgtaaacacataac |
32 |
Q |
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| T |
10318866 |
cattagcaaaccctataatgtaaacacataac |
10318835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10318995 - 10318964
Alignment:
| Q |
1 |
cattagcaaaccctataatgtaaacacataac |
32 |
Q |
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| T |
10318995 |
cattagcaaaccctataatgtaaacacataac |
10318964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10336110 - 10336079
Alignment:
| Q |
1 |
cattagcaaaccctataatgtaaacacataac |
32 |
Q |
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| T |
10336110 |
cattagcaaaccctataatgtaaacacataac |
10336079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 35630426 - 35630500
Alignment:
| Q |
140 |
gaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcatt |
214 |
Q |
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| T |
35630426 |
gaagaggtgttcagagatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatt |
35630500 |
T |
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