View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13750_low_1 (Length: 542)
Name: NF13750_low_1
Description: NF13750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13750_low_1 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 172 - 535
Target Start/End: Original strand, 22529622 - 22529987
Alignment:
| Q |
172 |
tagttaagtaggctatgcacaagtcccta-tatgaactcctaagactaacttctagaaattactaacccgt----------attattatcttgatccttc |
260 |
Q |
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| T |
22529622 |
tagttaagtaggctatgcacaagtccctaatatgaactcctaagactaacttctagaaattactaacccgtggtttgaactattattatcttgatccttc |
22529721 |
T |
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| Q |
261 |
acttgttaaaacttagttagtttacaaagtatctaactcactcaataccaagtttataggtgcgtcaagactttttatcttcacttttgaaatcgaaaac |
360 |
Q |
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| T |
22529722 |
actt----------agttagtttacaaagtatctgactcactcaataccaagtttataggtgcgtcaagactttttattttcacttttgaaatcgaaaac |
22529811 |
T |
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| Q |
361 |
ttttaggtagagcaaaca-atgatttgagatttaaaatactttaaaaataatagtaataattaataatgatgataaagtgattattgttattgtaagatg |
459 |
Q |
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| T |
22529812 |
tattaggtagagcaaacagatgatttgagatttaaaatactttaaaaataatagtaataattaataatgatgataaagtgattattgttatcgttagatg |
22529911 |
T |
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| Q |
460 |
taagaaactgattgataagtatttaacgatgtgtaattgatatgttatttaacgatgttgtatttgatgatgatgt |
535 |
Q |
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| T |
22529912 |
taagaaactgatcgataagtatttaacgatgtgtaattgatgtgttatttaacgatgttgtatttgacgatgatgt |
22529987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 29497287 - 29497324
Alignment:
| Q |
480 |
atttaacgatgtgtaattgatatgttatttaacgatgt |
517 |
Q |
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| T |
29497287 |
atttaacgatgtgtaattgatctgttatttaaagatgt |
29497324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 534
Target Start/End: Original strand, 172311 - 172363
Alignment:
| Q |
482 |
ttaacgatgtgtaattgatatgttatttaacgatgttgtatttgatgatgatg |
534 |
Q |
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| T |
172311 |
ttaatgatgtgtaattgaagtgttatttaataatgttgtatttgacgatgatg |
172363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 534
Target Start/End: Complemental strand, 14644981 - 14644929
Alignment:
| Q |
482 |
ttaacgatgtgtaattgatatgttatttaacgatgttgtatttgatgatgatg |
534 |
Q |
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| T |
14644981 |
ttaatgatgtgtaattgaagtgttatttaataatgttgtatttgacgatgatg |
14644929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 502
Target Start/End: Complemental strand, 17737361 - 17737329
Alignment:
| Q |
470 |
attgataagtatttaacgatgtgtaattgatat |
502 |
Q |
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| T |
17737361 |
attgataagtatttaacgatgtgtatttgatat |
17737329 |
T |
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