View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13750_low_4 (Length: 235)

Name: NF13750_low_4
Description: NF13750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13750_low_4
NF13750_low_4
[»] chr3 (6 HSPs)
chr3 (133-219)||(10335892-10335978)
chr3 (133-219)||(10318648-10318734)
chr3 (1-32)||(10298532-10298563)
chr3 (1-32)||(10318835-10318866)
chr3 (1-32)||(10318964-10318995)
chr3 (1-32)||(10336079-10336110)
[»] chr7 (1 HSPs)
chr7 (140-214)||(35630426-35630500)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 10335978 - 10335892
Alignment:
Q  133 gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10335978 gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag 10335892  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 10318734 - 10318648
Alignment:
Q  133 gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10318734 gatttttgaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagactgcattgttag 10318648  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10298563 - 10298532
Alignment:
Q  1 cattagcaaaccctataatgtaaacacataac 32  Q
    ||||||||||||||||||||||||||||||||    
T  10298563 cattagcaaaccctataatgtaaacacataac 10298532  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10318866 - 10318835
Alignment:
Q  1 cattagcaaaccctataatgtaaacacataac 32  Q
    ||||||||||||||||||||||||||||||||    
T  10318866 cattagcaaaccctataatgtaaacacataac 10318835  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10318995 - 10318964
Alignment:
Q  1 cattagcaaaccctataatgtaaacacataac 32  Q
    ||||||||||||||||||||||||||||||||    
T  10318995 cattagcaaaccctataatgtaaacacataac 10318964  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10336110 - 10336079
Alignment:
Q  1 cattagcaaaccctataatgtaaacacataac 32  Q
    ||||||||||||||||||||||||||||||||    
T  10336110 cattagcaaaccctataatgtaaacacataac 10336079  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 35630426 - 35630500
Alignment:
Q  140 gaagagatgttcacagatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcatt 214  Q
    |||||| |||||| |||||||| ||||||| | |  |||||||||||| ||||||| ||||||||||||||||||    
T  35630426 gaagaggtgttcagagatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatt 35630500  T

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