View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_high_7 (Length: 377)
Name: NF13751_high_7
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 28 - 361
Target Start/End: Complemental strand, 5112676 - 5112346
Alignment:
| Q |
28 |
acaaaaattcaactactaatccaaatttagtaacactctctcttcttccttgttctcctaattcacctaatactaataataatgcaccaaaatttgaact |
127 |
Q |
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| T |
5112676 |
acaaaaattcaactactaatccaaatttagtaacactccctcttcttccttgttctcctaattcacctaata---ataataatgcattaaaatttgaact |
5112580 |
T |
|
| Q |
128 |
agaggtgatagatttgaacaacactaaagtggaagttccacaagagagggatcttttgcaacaactacaaaaaccagcttctagcaccaacaatgtcatc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112579 |
agaggtgatagatttgaacaacactaaagtggaagttccacaagagagggatcttttgcaacaactacaaaaaccagcttctagcaccaacaatgtcatc |
5112480 |
T |
|
| Q |
228 |
aatgtgatcgcgccgcaaccgattcgaccaattggttcatgcataaatgttggttgcataagtgaagtttcagctataccatgtgtaacaaaaacaccnn |
327 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112479 |
aatgtgatctcgccgcaaccgattcgaccaattggttcatgcataaatgttggttgcataagtgaagtttcagctataccatgtgtaacaaaaacaccta |
5112380 |
T |
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| Q |
328 |
nnnnncctgaggaattagaacaagaggttgagtc |
361 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5112379 |
aaaaacctgaggaattagaacaagaggttgagtc |
5112346 |
T |
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