View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_1 (Length: 701)
Name: NF13751_low_1
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 574
Target Start/End: Complemental strand, 51151865 - 51151306
Alignment:
| Q |
16 |
gttttctctctctacaaatagctactacttcctcttcttcctctagttttgaggcaacacaccccatctttaacactaacccttatcttctttggttttt |
115 |
Q |
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| T |
51151865 |
gttttctctctctacaaatagctactacttcctcttcttcctctagttttgaggcaacacaccccatctttaacagtaacccttatcttctttggttttt |
51151766 |
T |
|
| Q |
116 |
tcctttagaaaatgaagcaagaaagaaaggctcttgcttgatagattcaggaatgtgttgttgttttctctgacaaaaaggagggaactttcacagacag |
215 |
Q |
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| T |
51151765 |
tcctttagaaaatgaagcaagaaagaaaggctcttgcttgatagattcaggaatgtgttgttgttttctctgacaaaaaggagggaactttcacagacag |
51151666 |
T |
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| Q |
216 |
agagatgaaactttcaaatgggtttctaagaacac-nnnnnnngtttcnnnnnnnaccaagactgagttaaaccatttcctctttgacagaaaatcagca |
314 |
Q |
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| T |
51151665 |
agagatgaaactttcaaatgggtttctaagaacacaaaaaaaagtttctttttttaccaagactgagttaaaccatttcctctttgacagaaaatcagca |
51151566 |
T |
|
| Q |
315 |
gcatcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataatggttagtaccaagtacataaaaataagtgtagtaattattaatnn |
414 |
Q |
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| T |
51151565 |
gcatcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataatggttagtaccaagtacataaaaataaatgtagtaattattaataa |
51151466 |
T |
|
| Q |
415 |
nnnnntgcagttattagtagtggtttagtgttagtgaaataaactaatccttaaaaactgtaccattagcagaaaatctccacctnnnnnnnctgaaagt |
514 |
Q |
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| T |
51151465 |
aaaaatgcagttactagtagtggtttagtgttagtgaaataaactaatccttaaaaactgtaccattagcaaaaaatctccacctaaaaaaactgaaagt |
51151366 |
T |
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| Q |
515 |
tcataacnnnnnnnggtaaaatgaaagtctaaaacttgactacacatttgtactgcagac |
574 |
Q |
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| T |
51151365 |
tcataactttttttggtaaaatgaaagtctaaaacttgactacacatttgtactgcagac |
51151306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 644 - 691
Target Start/End: Complemental strand, 51151236 - 51151189
Alignment:
| Q |
644 |
tatggccatggtgaggcattcttgataaaagcaattgtttgaagtgat |
691 |
Q |
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| T |
51151236 |
tatggccatggtgaggcattcttgataaaagcacttgtttgaagtgat |
51151189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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