View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_11 (Length: 343)
Name: NF13751_low_11
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 325
Target Start/End: Complemental strand, 4946994 - 4946674
Alignment:
| Q |
5 |
tgtcgaagaatattggagatgcaagagaatccatcgtgtattggttaaagaaattgagatcctccattccctgttcaaaattagttaaagagtaagcttt |
104 |
Q |
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| T |
4946994 |
tgtcgaataatgttggagatgcaagagaatccatcgtgtattggttaaagaaattgagatcctccattccctgttcaaaattatttaaagagtaagcttt |
4946895 |
T |
|
| Q |
105 |
cttcttctatacatatgcaaattcattttatcggagtaaacatcataatccaaagttcgaccagaaaataatgtttggccaaaaattattcgagaactag |
204 |
Q |
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| T |
4946894 |
cttcttctatacatatgcaaattcattttatccgagtaaacatcataatccaaagttcgaccagaaaataatgtttggccaaaaattattcgagagctag |
4946795 |
T |
|
| Q |
205 |
gattctaagatgaatcactttaatatttcaagttcagctatagttatgattacttaagagtttaagaattttaagataggtgatctttgacagtagtatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4946794 |
gattctaagatgaatcactttaatatttcaagttcagctatagttatgattacttaagagtttaagaattttaagataggcgatctttgacagtagtatg |
4946695 |
T |
|
| Q |
305 |
cttacaagttcaggcacatag |
325 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4946694 |
cttacaagttcaggcacatag |
4946674 |
T |
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