View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_18 (Length: 262)
Name: NF13751_low_18
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 39586965 - 39587197
Alignment:
| Q |
18 |
gtcatagagtgaaggatggatagaaggtgggtgtcttggggttagaagggaccttagaaaacaaggttgtgttgttgggatcaaagacttgttattgctc |
117 |
Q |
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| T |
39586965 |
gtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatcaaagacttgttattgctc |
39587064 |
T |
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| Q |
118 |
gatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatt |
217 |
Q |
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| T |
39587065 |
gatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatt |
39587164 |
T |
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| Q |
218 |
tcatccaagttgcctgcacagttacaagatgat |
250 |
Q |
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| T |
39587165 |
tcatccaagttgcctgcacagttacaagatgat |
39587197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 39553855 - 39554081
Alignment:
| Q |
18 |
gtcatagagtgaaggatggatagaaggtgggtgtcttggggttagaagggaccttagaaaacaaggttgtgttgttgggatcaaagacttgttattgctc |
117 |
Q |
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| T |
39553855 |
gtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgttatcattg |
39553954 |
T |
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| Q |
118 |
gatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatt |
217 |
Q |
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| T |
39553955 |
ggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatt |
39554054 |
T |
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| Q |
218 |
tcatccaagttgcctgcacagttacaa |
244 |
Q |
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| T |
39554055 |
tcatccaagttgcctgcatagtaacaa |
39554081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 39543836 - 39544062
Alignment:
| Q |
18 |
gtcatagagtgaaggatggatagaaggtgggtgtcttggggttagaagggaccttagaaaacaaggttgtgttgttgggatcaaagacttgttattgctc |
117 |
Q |
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|||||| ||||||||||| || ||||||||| ||| |||||| | ||| |||| | |||||||||||| |||||||||||||||||||||||||| | |
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| T |
39543836 |
gtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggatcaaagacttgttattgttg |
39543935 |
T |
|
| Q |
118 |
gatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatt |
217 |
Q |
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| T |
39543936 |
ggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatt |
39544035 |
T |
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| Q |
218 |
tcatccaagttgcctgcacagttacaa |
244 |
Q |
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| T |
39544036 |
tcatccatgttgtctgcatagtaacaa |
39544062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 17503777 - 17503870
Alignment:
| Q |
122 |
gggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccaca |
215 |
Q |
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|||| ||||||||||||||||| || |||||||||| ||||| || || ||||| ||||| ||||| |||| |||||||||| ||||||||| |
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| T |
17503777 |
gggccatctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 17475659 - 17475747
Alignment:
| Q |
127 |
atctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccaca |
215 |
Q |
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| T |
17475659 |
atctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactacaatcccaccaca |
17475747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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