View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_21 (Length: 237)
Name: NF13751_low_21
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7207228 - 7207006
Alignment:
| Q |
1 |
gttacaccagcctgtaaaatcaaattggtaagaatttgaggattgcttaaattaatagcaaattagccaacagatgatggaaattactctgcagtaaaaa |
100 |
Q |
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| T |
7207228 |
gttacaccagcctgtaaaatcaaattggtaagaatttgaggattgcttaaattaatagcaaattagccaacagatgatggaaattactctgcagtaaaaa |
7207129 |
T |
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| Q |
101 |
agaattactatgaaattaagcatggcactgaatcaacctggattcaatcctatcatacattcattataaactgaaattgcatgtagtttcaaaaaacat- |
199 |
Q |
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| T |
7207128 |
agaattactatgaaattaagcatgacactgaatcaacctggattcaatactatcatacattcattataaactgaaattgcatgtagtttcaaaaaacata |
7207029 |
T |
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| Q |
200 |
aaagatctagaaagcaaagatct |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
7207028 |
aaagatctagaaagcaaagatct |
7207006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 7200567 - 7200448
Alignment:
| Q |
103 |
aattactatgaaattaagcatggcactgaatcaacctggattcaatcctatcatacattcattataaactgaaattgcatgtagtttcaaaaaacataaa |
202 |
Q |
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| T |
7200567 |
aattagtaggaaattaagcatgacactgaatcaaccgggattcaatattatcatacattcattatcaactgaaattgcatatagtttcgaaaaacataaa |
7200468 |
T |
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| Q |
203 |
gatctagaaagcaaagatct |
222 |
Q |
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| T |
7200467 |
gatctagaaagcaaagatct |
7200448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7213231 - 7213169
Alignment:
| Q |
1 |
gttacaccagcctgtaaaatcaaattggtaagaatttgaggattgcttaaattaatagcaaat |
63 |
Q |
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| T |
7213231 |
gttacaccagcctgtaaaatgaaattggttagaatttgaggattgcttaaattaatagcaaat |
7213169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7200599 - 7200564
Alignment:
| Q |
1 |
gttacaccagcctgtaaaatcaaattggtaagaatt |
36 |
Q |
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| T |
7200599 |
gttacaccagcctgtaaaatcaaattggtaacaatt |
7200564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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