View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_23 (Length: 215)
Name: NF13751_low_23
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 23830014 - 23830210
Alignment:
| Q |
1 |
ccataactgtcaagctttatcttttagttgctaacnnnnnnncatgagaatgaaaacaaaataaacaaggacaacaaagaaaagcaaactgcatttgcgg |
100 |
Q |
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| T |
23830014 |
ccataactgtcaagctttatcttttagttgctaactttttttcatgagaatgaaaacaaaataaacaagaacaacaaagaaaagcaaactgcattcgcgg |
23830113 |
T |
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| Q |
101 |
atgagcaacgcctatagcatcaacagtcaaaacacgactaagctgacgagcacaacagagtggcgaagtgtctgagaaaaatatactagtactagta |
197 |
Q |
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| T |
23830114 |
atgagcaacgcctatagcatcaacagtcaaaacacgactaagctgacgagcacaacagagtggtgaagtgtctgagaaaaatatactagtactagta |
23830210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 23820974 - 23821044
Alignment:
| Q |
127 |
tcaaaacacgactaagctgacgagcacaacagagtggcgaagtgtctgagaaaaatatactagtactagta |
197 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||| |||| |
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| T |
23820974 |
tcaaaacatgactaagctgaggagcacaatggagtggcgaagagtgtgagaaaagtatactagtaccagta |
23821044 |
T |
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