View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13751_low_3 (Length: 421)
Name: NF13751_low_3
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 21903606 - 21903461
Alignment:
| Q |
12 |
atgaaaagcaagtgaaaacaagactaattttctatttaaagtgaaataccaagagagatggaccttagaaattgactgcttctttgattgtgattttgca |
111 |
Q |
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| T |
21903606 |
atgaaaagcaagcgaaaacaagactaattttctatttaaagtgaaataccaagagagatggaccttagaaattgactgcttctttgattgtgattttgca |
21903507 |
T |
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| Q |
112 |
gtttgtttggcttcagatgttagggtgagctacaaagtaggccaac |
157 |
Q |
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| T |
21903506 |
gtttgtttggcttcagatgttagggtgagctacaaagtaggccaac |
21903461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 258 - 405
Target Start/End: Complemental strand, 21903363 - 21903214
Alignment:
| Q |
258 |
taacttaagtagtaaatgctaaccttgatgcaaattacttgaaaataaa-ttaga-caaaagaaaaaacagtttcaattagttattaccttgctaagtaa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| |
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| T |
21903363 |
taacttaagtagtaaatgctaaccttgatgcaaattacttgaaaataaaattagaacaaaagaaaaaacaattgcaattagttattaccttgctaagtaa |
21903264 |
T |
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| Q |
356 |
ttctattggtggttcatcggtaaatctcttgtcgtttgattcctaagaag |
405 |
Q |
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| T |
21903263 |
ttctgttggtggttcatcggtaaatctcttgtcgtttgattcctaagaag |
21903214 |
T |
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