View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13751_low_6 (Length: 390)
Name: NF13751_low_6
Description: NF13751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13751_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 132 - 378
Target Start/End: Original strand, 12277512 - 12277759
Alignment:
| Q |
132 |
ttaattctttgatccttcgcaaactgcatacaccatcggatgccaagagcttcagcagttttaggatcagctgtcatttgttcctttttgcaagctgaga |
231 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12277512 |
ttaattctttgatccttcgcaagctgcatacaccatcggatgccaagagcttcagcagttttaggatcagctgtcatttgttcctttttgcaagctgaga |
12277611 |
T |
|
| Q |
232 |
atgttgttacacttgtatagtccttgaacacgcaaacagacgcagtatagccgtccgagaaacaacctgcatcaacagaaatcacatgagcatgagaaat |
331 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12277612 |
atgttgttaaacttgtatagtccttgaacacgcaaacatacgcagtatagccgtccgagaaacaacctgcatcaacagaaatcacatgagcatgagaaat |
12277711 |
T |
|
| Q |
332 |
ttgaactt-gctcctgctgtgcgccatgcttcctactcttcatcttct |
378 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||| |||||| |
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| T |
12277712 |
ttgaacttggctcctgttgtgcgccatgcttcctactcttcgtcttct |
12277759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 24359212 - 24359594
Alignment:
| Q |
1 |
taacagaaaccttactaaaagcattcataatagtttaacaatctgccacaatgtgttcaatactagcaatagaattagagcccctaatgcattccactat |
100 |
Q |
| |
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||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
24359212 |
taacagataccttactaaagacattcataagagttttacaatctgccacaatgtgttaaaaactagcaatagaattagagcccctaatgcattccactac |
24359311 |
T |
|
| Q |
101 |
agccaatgcatctgactgcacaacaa-----tttctttaattctttgatccttcgcaaactgcatacaccatcggatgccaagagcttcagcagttttag |
195 |
Q |
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| |||| |||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||| |
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| T |
24359312 |
aaccaacgcatctgactgcacaatgatttcttttctttaattctttgatccttcgtgtgctgcatacaccagcggatgccaagagcttcagcaattgtag |
24359411 |
T |
|
| Q |
196 |
gatcagctgtcatttgttcctttttgcaagctgagaatgttgttacacttgtatagtccttgaacacgcaaacagacgcagtatagccgtccgagaaaca |
295 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
24359412 |
gttcatctgtcatttgttcctttttgcaagctgagaatgtagttacacctgtatagtcattgaacacgcagccagatgcagtatagccatccgagaaaca |
24359511 |
T |
|
| Q |
296 |
acctgcatcaacagaaatcacatgagcatgagaaatttgaacttgctcctgctgtgcgccatgcttcctactcttcatcttct |
378 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||| | |||||| ||| ||| ||||||| ||||||| |||||| |
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| T |
24359512 |
acctgcatcaacagaaatcacttgagcatgagaagtttgaattaactcctgtcgtgtgccctgcttccaactcttcgtcttct |
24359594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 12277048 - 12277187
Alignment:
| Q |
1 |
taacagaaaccttactaaaagcattcataatagtttaacaatctgccacaatgtgttcaatactagcaatagaattagagcccctaatgcattccactat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12277048 |
taacagaaaccttactaaaagcattcataatagtttaacaatctgccacaatgtgttcaatactagcaatagaattagagcccctaatgcattccactac |
12277147 |
T |
|
| Q |
101 |
agccaatgcatctgactgcacaacaatttctttaattctt |
140 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
12277148 |
agccaacgcatctgactgcacaacaatttctttaattctt |
12277187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 378
Target Start/End: Complemental strand, 24183017 - 24182716
Alignment:
| Q |
82 |
ccctaatgcattccactatagccaatgcatctgactgcacaacaa-----tttctttaattctttgatccttcgcaaactgcatacaccatcggatgcca |
176 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
24183017 |
ccctaatgcattccactaaaaccaacacatctgactgcacaatgatttcttttctttaattctttgatccttcgtgtgctgcatacaccagcggatgcca |
24182918 |
T |
|
| Q |
177 |
agagcttcagcagttttaggatcagctgtcatttgttcctttttgcaagctgagaatgttgttacacttgtatagtccttgaacacgcaaacagacgcag |
276 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| |||| |
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|
| T |
24182917 |
agagcttcagcaattgtaggttcagctgtcatttgttcctttttgcaagctgagaatgtagttacacctgtatagtcattgaacacgcagccagatgcag |
24182818 |
T |
|
| Q |
277 |
tatagccgtccgagaaacaacctgcatcaacagaaatcacatgagcatgagaaatttgaacttgctcctgctgtgcgccatgcttcctactcttcatctt |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| ||||||| |||| |
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| T |
24182817 |
tatagccatccgagaaacaacctgcatcaacagaaatcacatgagcatgagaagtttgaattaactcctgtcgtgcgccctgcttccaactcttcgtctt |
24182718 |
T |
|
| Q |
377 |
ct |
378 |
Q |
| |
|
|| |
|
|
| T |
24182717 |
ct |
24182716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24183062 - 24183016
Alignment:
| Q |
1 |
taacagaaaccttactaaaagcattcataatagtttaacaatctgcc |
47 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||| |||||||||| |
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|
| T |
24183062 |
taacagataccttactaaaggcattcataagagttttacaatctgcc |
24183016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 378
Target Start/End: Original strand, 419545 - 419846
Alignment:
| Q |
82 |
ccctaatgcattccactatagccaatgcatctgactgcacaacaa-----tttctttaattctttgatccttcgcaaactgcatacaccatcggatgcca |
176 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
419545 |
ccctaatgcattccactacaaccaacacatctgactgcacaatgatttcttttctttaattctttgatccttcgcgtgctgcatacaccagcggatgcca |
419644 |
T |
|
| Q |
177 |
agagcttcagcagttttaggatcagctgtcatttgttcctttttgcaagctgagaatgttgttacacttgtatagtccttgaacacgcaaacagacgcag |
276 |
Q |
| |
|
|||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| |||| |
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|
| T |
419645 |
agagcttcagcaattgtaggttcaactgtcatttgttcctttttgcaagctgagaatgtagttacacctgtatagtcattgaacacgcagccagatgcag |
419744 |
T |
|
| Q |
277 |
tatagccgtccgagaaacaacctgcatcaacagaaatcacatgagcatgagaaatttgaacttgctcctgctgtgcgccatgcttcctactcttcatctt |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| ||||||| |||| |
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|
| T |
419745 |
tatagccatccgagaaacaacctgcatcaacagaaatcacatgagcatgagaagtttgaattaactcctgtcgtgcgccctgcttccaactcttcgtctt |
419844 |
T |
|
| Q |
377 |
ct |
378 |
Q |
| |
|
|| |
|
|
| T |
419845 |
ct |
419846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 82 - 378
Target Start/End: Complemental strand, 406533 - 406232
Alignment:
| Q |
82 |
ccctaatgcattccactatagccaatgcatctgactgcacaacaa-----tttctttaattctttgatccttcgcaaactgcatacaccatcggatgcca |
176 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
406533 |
ccctaatgcattccactacaaccaacacatctgactgcacaatgatttcttttctttaattctttgatccttcgcgtgctgcatacaccagcggatgcca |
406434 |
T |
|
| Q |
177 |
agagcttcagcagttttaggatcagctgtcatttgttcctttttgcaagctgagaatgttgttacacttgtatagtccttgaacacgcaaacagacgcag |
276 |
Q |
| |
|
|||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |||| |||| |
|
|
| T |
406433 |
agagcttcagcaattgtaggttcaactgtcatttgttcctttttgcaagctgagaatgtagttacacctgtatagtcattgaacacacagccagatgcag |
406334 |
T |
|
| Q |
277 |
tatagccgtccgagaaacaacctgcatcaacagaaatcacatgagcatgagaaatttgaacttgctcctgctgtgcgccatgcttcctactcttcatctt |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| ||||||| |||| |
|
|
| T |
406333 |
tatagccatccgagaaacaacctgcatcaacagaaatcacatgagcatgagaagtttgaattaactcctgtcgtgcgccttgcttccaactcttcgtctt |
406234 |
T |
|
| Q |
377 |
ct |
378 |
Q |
| |
|
|| |
|
|
| T |
406233 |
ct |
406232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 2857147 - 2857307
Alignment:
| Q |
1 |
taacagaaaccttactaaaagcattcataatagtttaacaatctgccacaatgtgttcaatactagcaatagaattagagcccctaatgcattccactat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| || |||| |||| ||||||||||||||| |
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|
| T |
2857147 |
taacagataccttactaaaagcattcataaaagctttacaatctgcaacaatgtgttcaatactagcaatggagttagtgccc-taatgcattccactac |
2857245 |
T |
|
| Q |
101 |
agccaatgcatctgactgcacaacaatttctttaattctttgatccttcgcaaactgcatac |
162 |
Q |
| |
|
| |||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2857246 |
aaccaacgcatttgactgcacaataatttctttaattctttgatccttcgcaagatgcatac |
2857307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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