View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13752_high_11 (Length: 309)

Name: NF13752_high_11
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13752_high_11
NF13752_high_11
[»] chr3 (1 HSPs)
chr3 (18-309)||(40296255-40296546)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 40296546 - 40296255
Alignment:
Q  18 aggatgacacctcctgcatcagtatgagctcggagaccattcacaagttccggatgagggcagggtgggtagtggctgaccttggtgccaaagaaagcat 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40296546 aggatgacacctcctgcatcagtgtgagctcggagaccattcacaagttccggatgagggcagggtgggtagtggctgaccttggtgccaaagaaagcat 40296447  T
Q  118 tgtctccttctccatcattcagtgccttcttgatgtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40296446 tgtctccttctccatcattcagtgccttcttgatgtatccttttggtaagcccagattctcatccatcacttctgtgagactcactgccagtttctttaa 40296347  T
Q  218 ctcagaccgatattctgatatggtttccctgtcattcacatgagaagtcagttatacactcatgttgaaactctacctattatgctatgtca 309  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  40296346 ctcagaccgatattctgacatggtttccctgtcattcacatgagaagtcagttatacattcatgttgaaactctacctattatgccatgtca 40296255  T

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