View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13752_high_16 (Length: 255)
Name: NF13752_high_16
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_high_16 |
 | |
|
| [»] chr6 (28 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 5065779 - 5065532
Alignment:
| Q |
8 |
agattattctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtc |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5065779 |
agattcttctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatgaaagggcgtatgttgaagacaataatgatatgcattgtc |
5065680 |
T |
|
| Q |
108 |
tattcttcaaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5065679 |
tattcttcaaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctataagagagaggcgt |
5065580 |
T |
|
| Q |
208 |
taatctcctttgaagatgaggaggggcagagagtagtatcaagtattg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5065579 |
taatctcctttgaagatgaggaggggcagagagtagtatcaagtattg |
5065532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 5253514 - 5253699
Alignment:
| Q |
8 |
agattattctgtaacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtc |
107 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5253514 |
agattcttctgtaactttcaattgtgaaggttcttctgtaccttttaaagtccctcaattggaagggcgtatgttgaagacaataaagataagcattgtc |
5253613 |
T |
|
| Q |
108 |
tattcttcaaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctcta |
193 |
Q |
| |
|
|| ||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5253614 |
taatcttcaaccccagataacacaacatctgatggcttcacaaatttgttggtaaaaaattacacaaaggccaccattcagctcta |
5253699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 5126935 - 5126714
Alignment:
| Q |
32 |
cgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacata |
131 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| || ||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5126935 |
cgaaggttcttcggtaacttttgaagtacctcaagtgaaagggcgtacgttgaagaaagtaatgatatgcattgtctattcttcaaccttggataacata |
5126836 |
T |
|
| Q |
132 |
gcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggagg |
231 |
Q |
| |
|
|||| |||||||| |||| |||||||| ||||||||||| || |||||||||| ||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5126835 |
acatcagatggccttacaagcttgttggtgaaaaattacacgaaggccaccattcaactctataagagagaggcagcagtctcctttgaagatgaggagg |
5126736 |
T |
|
| Q |
232 |
ggcagagagtagtatcaagtat |
253 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
5126735 |
gggagagagtagtatcaagtat |
5126714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 5346005 - 5346239
Alignment:
| Q |
19 |
taacttacaattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaac |
118 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5346005 |
taactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcgaatgttgaagacaataacgatatgtgttgtctattcttcaac |
5346104 |
T |
|
| Q |
119 |
cccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctccttt |
218 |
Q |
| |
|
||||||| ||| ||||||||||||| | ||| |||||||| |||||||||||||| | ||||||||||| |||||||||||||| || | ||||| |
|
|
| T |
5346105 |
ttcggataatataacatctgatggcctgagaaacttgttggtgaaaaattacacaaaggctaccattcagctatacaagagagaggcagtagccgccttt |
5346204 |
T |
|
| Q |
219 |
gaagatgaggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5346205 |
gaagatgaggagggccagagagttgtatcaagtat |
5346239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 5177722 - 5177949
Alignment:
| Q |
26 |
caattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggat |
125 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||| | | || |||||||| ||||||||||||| |||||||||||||| |||| |
|
|
| T |
5177722 |
caattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacaatgatgatatgcattgactattcttcaaccctggat |
5177821 |
T |
|
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg |
225 |
Q |
| |
|
|| ||| |||| ||||||| |||| |||||||| || |||||||||||| ||||||||||||| || ||||||||||| ||| |||||||||||||| |
|
|
| T |
5177822 |
aatataacatcaaatggccttgcaaacttgttggttaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatg |
5177921 |
T |
|
| Q |
226 |
aggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||| |||||||||||||||||||| |
|
|
| T |
5177922 |
aagagggtcagagagtagtatcaagtat |
5177949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 5242817 - 5242597
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||| ||| |
|
|
| T |
5242817 |
gaaggttcttctgttacttttgaagtccctcaagtggaagggcgaatgttgaagacaataacgatatgtgctgtctattcttcaacttcggatagtataa |
5242718 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||||||||||||| ||| ||||| || |||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||| |||| |
|
|
| T |
5242717 |
catctgatggccttggaaacttgttagtgaaaaattacacaaaggccaccattcagctctacaagagagaggcagtagccgcctttgaagatgagaaggg |
5242618 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
|| ||||||||||| |||||| |
|
|
| T |
5242617 |
gctgagagtagtatgaagtat |
5242597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 5279547 - 5279774
Alignment:
| Q |
26 |
caattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggat |
125 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||| | | || |||||| | ||||||||||||| |||||||||||||| |||| |
|
|
| T |
5279547 |
caattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggtgcactttaaagacattgatgatatgcattgactattcttcaaccctggat |
5279646 |
T |
|
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg |
225 |
Q |
| |
|
|| ||| |||| ||||||| |||| |||||||| || |||||||||||| ||||||||||||| || ||||||||||| ||| |||||||||||||| |
|
|
| T |
5279647 |
aatataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatg |
5279746 |
T |
|
| Q |
226 |
aggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||| |||||||||||||||||||| |
|
|
| T |
5279747 |
aagagggtcagagagtagtatcaagtat |
5279774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 5689215 - 5688988
Alignment:
| Q |
26 |
caattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggat |
125 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||| | || |||||| | ||||||||||| | ||||||| |||||| |||| |
|
|
| T |
5689215 |
caattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcgcactttaaagacattgatgatatgcatcgactattctacaaccctggat |
5689116 |
T |
|
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg |
225 |
Q |
| |
|
|||||| |||| ||||||| |||| |||||||| || |||||||||||| ||||||||||||| || ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
5689115 |
aacataacatcaaatggccttgcaaacttgttggtgaagaattacacaaaagccaccattcagctttataagagcgaggcattagtctcctttgaagatg |
5689016 |
T |
|
| Q |
226 |
aggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||| |||||||||||||||||||| |
|
|
| T |
5689015 |
aagagggacagagagtagtatcaagtat |
5688988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 5136221 - 5136004
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5136221 |
gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataa |
5136125 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| || || ||| |||||||||||||||||||| |
|
|
| T |
5136124 |
catcaagtggccttaaaaatgtgttggtaaaaaattacacaaaggccaccattcagctctacaagagcgaagcattagcctcctttgaagatgaggaggc |
5136025 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
5136024 |
tctgagggtagtatcaagtat |
5136004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 5101120 - 5100903
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
5101120 |
gaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataacataa |
5101024 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||| | |||| |||| || |||||||||||||| |||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
5101023 |
catcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggc |
5100924 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
5100923 |
tctgagggtagtatcaagtat |
5100903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 5353165 - 5352948
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||| ||| |||||| ||||| | ||||||| |||||||| |
|
|
| T |
5353165 |
gaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagacaatgatg---tgcattatctatacgtcaacccaaaataacataa |
5353069 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
| || ||||||| | |||| ||||| |||||||||||||||| | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5353068 |
cttcatatggccttaaaaatgtgttgctaaaaaattacacaaaggctaccattcagctttataagagagaggcattaatttcctttgaagatgaggaggg |
5352969 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5352968 |
gcagagagtagtatcaagtat |
5352948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 5439004 - 5439206
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||| |||| | || | ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
5439004 |
gaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtcattgatg---tgcattgtctattcttcaactccggataacataa |
5439100 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| ||| |||| | |||| | ||||| | |||| ||||||| |||||||||||||||| ||||| ||||| || |||| ||||||||||||||||| |
|
|
| T |
5439101 |
catcagatagccttataaatgtattggtgataaatcacacaaaggccaccattcagctctataagagtgaggctgtagtctcttttgaagatgaggaggg |
5439200 |
T |
|
| Q |
233 |
gcagag |
238 |
Q |
| |
|
|||||| |
|
|
| T |
5439201 |
gcagag |
5439206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 5398042 - 5398256
Alignment:
| Q |
36 |
ggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatagcat |
135 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||| ||||||||||| ||| |||||||| ||| ||||||| | |||||| || ||| |
|
|
| T |
5398042 |
ggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagacaatgatg---tgcattgtgtatacttcaactctggataatgtaacat |
5398138 |
T |
|
| Q |
136 |
ctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggggca |
235 |
Q |
| |
|
|| |||||| | ||| |||| || | |||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
5398139 |
ctagtggccttaaaaacatgttagtgataaattacacaaaggccaccattcagctctataagagtgaggcgttattctcctttgaacatgaagaggggca |
5398238 |
T |
|
| Q |
236 |
gagagtagtatcaagtat |
253 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5398239 |
aagggtagtatcaagtat |
5398256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 5448602 - 5448819
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| |||| | || | ||| |||||||||||| |||||||||| ||||| || |
|
|
| T |
5448602 |
gaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtcattgatg---tgcattgtctatacttcaaccccagataatgtaa |
5448698 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||||| |||||| | |||| ||||||| |||||||||||||| | |||||||| |||| ||||| ||| | ||| | |||||||||||| ||||||| |
|
|
| T |
5448699 |
catctagtggccttaaaaatgtgttggtgaaaaattacacaaaggctaccattcaaatctataagagtgagacattagtttcctttgaagataaggaggg |
5448798 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
5448799 |
gcagaggttagtatcaagtat |
5448819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5156315 - 5156100
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||| | |||||||| |||||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||| || |
|
|
| T |
5156315 |
gaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatacttcaaccccagataatgtaa |
5156219 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||| | |||||| | ||| |||| | |||||||||||||| ||||||||||||| || ||||| ||||| || ||||||||||||||| ||||| |
|
|
| T |
5156218 |
catgtagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaggcattggcctcctttgaagatgaagaggg |
5156119 |
T |
|
| Q |
233 |
gcagagagtagtatcaagt |
251 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
5156118 |
gcagagggtagtatcaagt |
5156100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 5372090 - 5372305
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||| | |||||||| |||||| |||||||||||| ||||||||||| ||| |||| ||||| | ||||||| |||||||| || |
|
|
| T |
5372090 |
gaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatg---tgcaatgtctgtacttcaactccggataatgtaa |
5372186 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||||| |||||| | ||| |||| | |||||||||||||| ||||||||||||| || ||||| || || ||| |||||||||||||||| ||||| |
|
|
| T |
5372187 |
catctagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtgaagcattagtctcctttgaagatgaagaggg |
5372286 |
T |
|
| Q |
233 |
gcagagagtagtatcaagt |
251 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
5372287 |
gcagagggtagtatcaagt |
5372305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 5351393 - 5351610
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||| ||| ||||| |||||| |||||||||| | |||| || |
|
|
| T |
5351393 |
gaagtttcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaagacaatgatg---tgcatagtctatacttcaacccctggtaacgtaa |
5351489 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||| | ||| |||| || |||||||||||||| ||||||||| |||||| ||||| ||||| ||| | |||||||||||||||||||| |
|
|
| T |
5351490 |
catcaagtggccttaaaaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtgaggcattagtttcctttgaagatgaggaggg |
5351589 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
5351590 |
gcagaggttagtatcaagtat |
5351610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 253
Target Start/End: Complemental strand, 5072966 - 5072767
Alignment:
| Q |
51 |
tttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcacaa |
150 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| ||||||| |||||||||||||| | || |||| ||| ||| || ||||| | || |
|
|
| T |
5072966 |
tttgaagtccctcaagtggaagggcgcatattgaagacaat---gatatgcgttgtctattcttcaccaccaaataatgtagtatcagacggccttaaaa |
5072870 |
T |
|
| Q |
151 |
atttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggggcagagagtagtatcaag |
250 |
Q |
| |
|
| ||| |||| ||||||||||| ||| |||||||||| || || ||||||||||| ||| ||||||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
5072869 |
acttgatggtgaaaaattacactaaagccaccattcaactatataagagagaggcattagtctccttcaaagatgatgagggcgagagattagtatcaag |
5072770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 23127612 - 23127397
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| ||||||||| || |||||||||||||| || ||||| || |||||||||| |||||||| |
|
|
| T |
23127612 |
gaaggttcttctgtaagttttgaagctcctcaagtggaagggcataacgtgaagacaataatg---tgtgttgtcaatacttcaaccccagataacatta |
23127516 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
| || |||||| | | ||| |||||||||||||||||||||| ||||||||| |||| ||||||||| | ||| |||| || ||||||||||| || |
|
|
| T |
23127515 |
cctcggatggcgttaaaaacgtgttggtaaaaaattacacaaagggtaccattcagatctataagagagagacattagtctcgttcgaagatgaggaagg |
23127416 |
T |
|
| Q |
233 |
gcagagagtagtatcaagt |
251 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
23127415 |
gaagagcttagtatcaagt |
23127397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 5098204 - 5098421
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||| ||||||| |||| ||||| ||||| ||| |||||||||||| |||||||||| | |||||| |
|
|
| T |
5098204 |
gaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaacaatgatg---tgcattgtctatacttcaaccccagctaacatga |
5098300 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||| |||||| | ||| |||| || ||||| ||||||| |||||||||||||||| ||||| ||||| || |||||||||||||||||||| | |
|
|
| T |
5098301 |
tatcaagtggccttaaaaacatgttagtgaaaaaccacacaaaggccaccattcagctctataagagtgaggcattggtctcctttgaagatgaggagag |
5098400 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
5098401 |
ccagagggtaatatcaagtat |
5098421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 5181076 - 5180862
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||| | | |||||||| |||||| || |||| || |
|
|
| T |
5181076 |
gaaggttcttctgtaacttttgaagtccctttggtggaaggacgtaacttgaagacaatgatgct---cgttgtctataattcaactccacataatgtaa |
5180980 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||| | ||| |||| || |||||||||||||| | |||||||||||||| ||||| || ||||| |||| ||||||||||| ||||| |
|
|
| T |
5180979 |
catcaagtggccttaaaaacatgttagttaaaaattacacaaaggctaccattcagctctataagagtgatacgttagtctcttttgaagatgaagaggg |
5180880 |
T |
|
| Q |
233 |
gcagagagtagtatcaag |
250 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
5180879 |
tcagagggtagtatcaag |
5180862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 5426893 - 5427110
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||||||||||||| |||| || ||| |||||||||||| |||||||||| ||| ||||| |||||| |||||||||| | ||| || |
|
|
| T |
5426893 |
gaaggttcttctgtaacttttcaagttccacaagtggaagggcgtaacctgaagacaattatg---tgcatagtctatacttcaacccctggtaatgtaa |
5426989 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
||| |||||| | || |||| | |||||||||||||| ||| ||||||||| || ||||| |||| ||| | || ||||||||||||||||| |
|
|
| T |
5426990 |
tatcaagtggccttaaaatcatgttattgaaaaattacacaaaggccatcattcagctttataagagtgaggtattagtgtcatttgaagatgaggaggg |
5427089 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
5427090 |
ggaaagagtagtatcaagtat |
5427110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 5283514 - 5283429
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaacccc |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||| ||| |||||| | |||||| |||||||||||| |||||||||| |
|
|
| T |
5283514 |
gaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtc---aatgatgtgcattgtctatacttcaacccc |
5283429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 2938906 - 2939123
Alignment:
| Q |
37 |
gttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctatt--cttcaaccccggataacatagca |
134 |
Q |
| |
|
|||||||||| | |||||||| |||||| |||||||||||| ||||||||||| ||| |||||||||||| ||| |||||| ||||| || || |
|
|
| T |
2938906 |
gttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatg---tgcattgtctatatacttaaaccccagataatgtaaca |
2939002 |
T |
|
| Q |
135 |
tctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg----aggag |
230 |
Q |
| |
|
||| |||||| | ||| || | | |||||||| | ||| |||||||||||||||| ||||| ||||| ||| ||||||| ||||||| | || |
|
|
| T |
2939003 |
tctagtggccttaaaaacatgatattgaaaaattatataaaggccaccattcagctctataagagtgaggcattagtctccttcgaagatggatgaagaa |
2939102 |
T |
|
| Q |
231 |
gggcagagagtagtatcaagt |
251 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
2939103 |
gggcagagggtagtatcaagt |
2939123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 5256452 - 5256367
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaacccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||||| |||| | | |||||| |||||||||||| |||||||||| |
|
|
| T |
5256452 |
gaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtc---aatgatgtgcattgtctatacttcaacccc |
5256367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 5124655 - 5124528
Alignment:
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg |
225 |
Q |
| |
|
||||||||||| |||||||| | || | || |||| ||||||||||| || |||||||| ||||| |||||||| || ||| || | ||| |||| | |
|
|
| T |
5124655 |
aacatagcatcggatggccttaaaactgtgatggtgaaaaattacacgaaggggaccattcaactctataagagagatgcattagtcgcatttcaagagg |
5124556 |
T |
|
| Q |
226 |
aggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |
|
|
| T |
5124555 |
aggaggggcatagattagtatcgagtat |
5124528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 5253698 - 5253745
Alignment:
| Q |
208 |
taatctcctttgaagatgaggaggggcagagagtagtatcaagtattg |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||| |||||||| |
|
|
| T |
5253698 |
taatctcctttgaagacgaggaggggcaaagagtattattaagtattg |
5253745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 5334172 - 5334340
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||| | |||||||| |||||| |||||||| ||| |||||||| |||||| |||||| ||||| ||||||||| ||||| || |
|
|
| T |
5334172 |
gaaggttcttctgtgaaatttgaagttcctcaagtggaagggggtaacttgaagac---aatgatgtgcattttctataattcaaccccagataatgta- |
5334267 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggc |
205 |
Q |
| |
|
|||| |||||| | ||| |||| || | |||||||||||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
5334268 |
catcaagtggccttaaaaacatgttagtgataaattacacaaaggccaccattcaactctataagagtgaggc |
5334340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 36213230 - 36213006
Alignment:
| Q |
26 |
caattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggat |
125 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||||| | |||| || |||| || |||||||||||| || ||||||||||||||||| || || |
|
|
| T |
36213230 |
caattgcaaaggttcttctgtaatttttgatgtccctcgagtggatggacgtaacttaaagacaataatg---tgtattgtctattcttcaactccagaa |
36213134 |
T |
|
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatg |
225 |
Q |
| |
|
||||||||||| ||||| || | ||| || ||||||||||| ||||||| | ||||||||| |||| ||||||||||| ||| |||| |||||||||| |
|
|
| T |
36213133 |
aacatagcatcagatggacttaaaaacgtgatggtaaaaaatcacacaaaggctaccattcagatctataagagagaggcattagtctcatttgaagatg |
36213034 |
T |
|
| Q |
226 |
aggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
36213033 |
aggaggggcagagattagtatcaagtat |
36213006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 22583599 - 22583424
Alignment:
| Q |
26 |
caattgcgaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggat |
125 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22583599 |
caattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaagtcaataatgatctgcattgtctattcttcaaccccggat |
22583500 |
T |
|
| Q |
126 |
aacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagag |
201 |
Q |
| |
|
|||||| ||| ||||||| ||| |||||||| |||||| | ||||| ||||||||||| |||||||||||| |
|
|
| T |
22583499 |
aacataagatccgatggccctacagccttgttggtgaaaaatcatacaaaggccaccattcagttctacaagagag |
22583424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 47985695 - 47985478
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| || || |||||||| ||| |||||||||||| |||||||| | ||| ||||| |
|
|
| T |
47985695 |
gaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatg---tgcattgtctatacttcaacctcagatgacataa |
47985599 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||||| | ||| |||| || | |||| |||||| | ||| |||||| ||||| ||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
47985598 |
catcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggaggg |
47985499 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
47985498 |
ggagagagtagtatcaagtat |
47985478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 47994982 - 47994765
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| || || |||||||| ||| |||||||||||| |||||||| | ||| ||||| |
|
|
| T |
47994982 |
gaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatg---tgcattgtctatacttcaacctcagatgacataa |
47994886 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||||| | ||| |||| || | |||| |||||| | ||| |||||| ||||| ||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
47994885 |
catcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggaggg |
47994786 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
47994785 |
ggagagagtagtatcaagtat |
47994765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 48004269 - 48004052
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| || || |||||||| ||| |||||||||||| |||||||| | ||| ||||| |
|
|
| T |
48004269 |
gaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatg---tgcattgtctatacttcaacctcagatgacataa |
48004173 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||||| | ||| |||| || | |||| |||||| | ||| |||||| ||||| ||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
48004172 |
catcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggaggg |
48004073 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
48004072 |
ggagagagtagtatcaagtat |
48004052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 48013554 - 48013337
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| ||| || || |||||||| ||| |||||||||||| |||||||| | ||| ||||| |
|
|
| T |
48013554 |
gaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatgatg---tgcattgtctatacttcaacctcagatgacataa |
48013458 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||||| | ||| |||| || | |||| |||||| | ||| |||||| ||||| ||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
48013457 |
catcagatggccttaaaaacgtgttagtgataaatcacacaagagccatcattcaactctataagagtgagacattaatctcctttggagatgaggaggg |
48013358 |
T |
|
| Q |
233 |
gcagagagtagtatcaagtat |
253 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
48013357 |
ggagagagtagtatcaagtat |
48013337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 4319604 - 4319399
Alignment:
| Q |
33 |
gaaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatag |
132 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||| ||| | ||||| |
|
|
| T |
4319604 |
gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatg---tgcattgtctattcttcaagcccatacgacataa |
4319508 |
T |
|
| Q |
133 |
catctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggg |
232 |
Q |
| |
|
|||| |||||||| |||| |||| || | |||| ||||||| |||||||||| ||||| |||||||| || ||| |||||||||| |||||||| | |
|
|
| T |
4319507 |
catcagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagagagaagcattatcctcctttgaaaatgaggagtg |
4319408 |
T |
|
| Q |
233 |
gcagagagt |
241 |
Q |
| |
|
||||||||| |
|
|
| T |
4319407 |
gcagagagt |
4319399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 4362546 - 4362718
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatagc |
133 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||| ||| || ||||| | |
|
|
| T |
4362546 |
aaggttattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatg---tgcattgtctattcttcaagcccatatgacataac |
4362642 |
T |
|
| Q |
134 |
atctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgtta |
209 |
Q |
| |
|
||| |||||||| | |||| ||||||| | |||| ||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
4362643 |
atcagatggccttagaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagagaggcgtta |
4362718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 4336896 - 4337108
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatagc |
133 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||||| ||| || ||||| | |
|
|
| T |
4336896 |
aaggttattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatg---tgcattgtctattcttcaagcccaaatgacataac |
4336992 |
T |
|
| Q |
134 |
atctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggagggg |
233 |
Q |
| |
|
||| |||||||| |||| ||||||| | |||| ||||||| |||||||||| |||| ||||||||||| ||| ||||| ||| |||||||| || |
|
|
| T |
4336993 |
atcagatggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctttaagagagaggcattatcgtccttcgaaaatgaggagtgg |
4337092 |
T |
|
| Q |
234 |
cagagagtagtatcaa |
249 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
4337093 |
cagagagtggtatcaa |
4337108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 4122929 - 4122733
Alignment:
| Q |
50 |
ttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacatagcatctgatggcctcaca |
149 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| ||| |||||||||||||| |||| ||| || ||||||||| | |||||| | |
|
|
| T |
4122929 |
ttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatg---tgcattgtctattcatcaagcccaaatggcatagcatcagttggccttcaa |
4122833 |
T |
|
| Q |
150 |
aatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggggcagagagtagtatcaa |
249 |
Q |
| |
|
||| ||||||| | |||| ||||||| |||||||||| ||||| ||||||||||||||| |||||| ||| ||||||| || ||||||| ||||||| |
|
|
| T |
4122832 |
aatgtgttggtgataaatcacacaaagaccaccattcaactctataagagagaggcgttatcctccttagaaaatgaggaatggaagagagtggtatcaa |
4122733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 25568954 - 25569050
Alignment:
| Q |
157 |
tggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggggcagagagtagtatcaagtat |
253 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| |||||||||||||||| ||| | ||||||||| | ||||||||||| | ||||||||||||||| |
|
|
| T |
25568954 |
tggtgaaaaattacaccaagtccaccattcaggtctacaagagagaggcattagtttcctttgaaaacgaggaggggcatatagtagtatcaagtat |
25569050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 4346350 - 4346529
Alignment:
| Q |
34 |
aaggttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttcaaccccggataacata-- |
131 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| | || ||||||||||||||| ||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
4346350 |
aaggttattctgtaatctttgaagtccctcaagtggaaggacatagcttgaagacaataatg---tgcattgtctattcttcaagcccagatgacataac |
4346446 |
T |
|
| Q |
132 |
-----gcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgtta |
209 |
Q |
| |
|
|||| |||||||| | |||| ||||||| | |||| ||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
4346447 |
atcagacatcagatggccttaaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagagaggcgtta |
4346529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 4132815 - 4132704
Alignment:
| Q |
138 |
gatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagagagaggcgttaatctcctttgaagatgaggaggggcaga |
237 |
Q |
| |
|
|||||||| | |||| ||||||| | |||| |||| || | |||||||||||||| ||||||||||| || |||||||||| |||||||| |||||| |
|
|
| T |
4132815 |
gatggcctaaaaaatgtgttggtgataaatcacacgaagactaccattcagctctataagagagaggcattcgcctcctttgaaaatgaggagtggcaga |
4132716 |
T |
|
| Q |
238 |
gagtagtatcaa |
249 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4132715 |
gagtagtatcaa |
4132704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 7884456 - 7884381
Alignment:
| Q |
37 |
gttcttctgtaacttttgaagtccctcaaatggaagggcgtatgttgaagacaataatgatatgcattgtctattcttc |
115 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||| |||||| ||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
7884456 |
gttcttctgtaactttcgaagtacctcaagtggacgggcgttctttgaagacaatcatg---tgcattgcctattcttc |
7884381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 8104 - 8016
Alignment:
| Q |
111 |
tcttcaaccccggataacatagcatctgatggcctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctacaagag |
199 |
Q |
| |
|
|||||||| ||||||||||| || | ||||| || | |||| |||| || |||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
8104 |
tcttcaactgcggataacataacaccagatggtcttaaaaatgtgttagtgaaaaattacacaaaggccaccattcagatctataagag |
8016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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