View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13752_high_19 (Length: 239)
Name: NF13752_high_19
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_high_19 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 10222339 - 10222566
Alignment:
| Q |
12 |
atcatcaataaaggccattgctttattcctcatgagactaagaaacttcttagggttgaactttggtaattcacactcttttggactccacctccaataa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10222339 |
atcaccaataaaggccattgctttattcctcatgagactaagaaacttcttagggttgaactttggtaattcacactcttttggactccacctccaataa |
10222438 |
T |
|
| Q |
112 |
aggtaccctaaatcaggtcttccatttttcatacaattttgatgaggttcaatcacatgacaactctcatttgtgtacattggttcagattgatcagaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10222439 |
aggtaccctaaatcaggtcttccatttttcatacaattttgatgaggttcaatcacatgacaactctcatttgtgtagattggttcagattgatcagaaa |
10222538 |
T |
|
| Q |
212 |
tccaatctcccacaaaaaggtcacattt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10222539 |
tccaatctcccacaaaaaggtcacattt |
10222566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University