View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13752_high_21 (Length: 231)

Name: NF13752_high_21
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13752_high_21
NF13752_high_21
[»] chr6 (11 HSPs)
chr6 (28-185)||(5184708-5184865)
chr6 (28-183)||(5264102-5264257)
chr6 (40-184)||(5394451-5394595)
chr6 (46-183)||(5331630-5331767)
chr6 (33-185)||(5444204-5444356)
chr6 (28-183)||(5393210-5393365)
chr6 (46-121)||(5093048-5093123)
chr6 (52-121)||(5160414-5160483)
chr6 (36-133)||(5340657-5340754)
chr6 (40-131)||(5358040-5358131)
chr6 (37-131)||(5366610-5366704)
[»] scaffold0864 (1 HSPs)
scaffold0864 (28-129)||(4512-4613)
[»] chr4 (3 HSPs)
chr4 (46-117)||(6501157-6501228)
chr4 (47-126)||(7889480-7889559)
chr4 (55-143)||(4332768-4332856)
[»] chr2 (1 HSPs)
chr2 (55-129)||(22589018-22589092)
[»] chr3 (1 HSPs)
chr3 (33-130)||(48016030-48016127)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 5184865 - 5184708
Alignment:
Q  28 agaagcataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttt 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184865 agaaccataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttt 5184766  T
Q  128 tgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtga 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184765 tgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtga 5184708  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 5264257 - 5264102
Alignment:
Q  28 agaagcataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttt 127  Q
    |||| ||||||||||   ||||| ||| ||||||||||| |||| || |||||||| |||||||||||||| |||||||||||| ||||||||| |||||    
T  5264257 agaaccataggacaaaaggttgtgccattgttctaccatttagaaccatctgaagtgcgtcatcagacaggagagtttggaatatcttttcaaaatcttt 5264158  T
Q  128 tgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgt 183  Q
    |||||||||||| || |||| |||||||||||| | ||||||||||||||||||||    
T  5264157 tgaacaaaatttcaatcgagaaggaattggtgcaaagttggagagaggctcttcgt 5264102  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 5394451 - 5394595
Alignment:
Q  40 caagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaacaaaattt 139  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| ||  |||||| ||| ||||||||||  || ||| ||||||||||||||| |||||    
T  5394451 caagtggttgttccagtgttctaccatgtagatccctctgaagtgcgcaatcagaaaggtgagtttggaagggcgtttgaaagtcttttgaacagaattt 5394550  T
Q  140 taaacgaggaggaattggtgctacgttggagagaggctcttcgtg 184  Q
    ||||||||| |||||||| ||||  ||||| ||||||||||||||    
T  5394551 taaacgaggtggaattggcgctaaattggaaagaggctcttcgtg 5394595  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 5331767 - 5331630
Alignment:
Q  46 gttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaacaaaattttaaacg 145  Q
    ||||| ||||||||||||||| |||| || ||| |||| |||||||||||||| || ||||||| |   ||||||||| ||||||||||||||| |||||    
T  5331767 gttgtgccagtgttctaccatttagaaccatctaaagtgcgtcatcagacaggagattttggaaaattatttcaaagttttttgaacaaaatttcaaacg 5331668  T
Q  146 aggaggaattggtgctacgttggagagaggctcttcgt 183  Q
    ||||| ||||||||| | ||||||||||||||||||||    
T  5331667 aggagcaattggtgcaaagttggagagaggctcttcgt 5331630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 5444204 - 5444356
Alignment:
Q  33 cataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaac 132  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||||||||| ||| ||| || |||  |||||||||||||||||||| ||||||||||     
T  5444204 cataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagcttttcaacgtcttttgaag 5444303  T
Q  133 aaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtga 185  Q
    ||| ||  |||  ||||| ||||||||||| |||||| | |||||||||||||    
T  5444304 aaagttccaaaaaaggagaaattggtgctaagttggaaaaaggctcttcgtga 5444356  T

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Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 5393210 - 5393365
Alignment:
Q  28 agaagcataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttt 127  Q
    |||| ||||||| |||| |||||||| |||||||||||||||| |||  ||||||| ||| |||||| ||| |||||||||||| ||||||||||| |||    
T  5393210 agaaccataggagaagtggttgttccggtgttctaccatgtagcccctactgaagtgcgttatcagaaaggagagtttggaatatcttttcaaagttttt 5393309  T
Q  128 tgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgt 183  Q
    ||||||||| || |||| ||| |||||| | |||| |||||||||  |||||||||    
T  5393310 tgaacaaaacttcaaacaaggtggaattagagctaagttggagagcagctcttcgt 5393365  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 5093048 - 5093123
Alignment:
Q  46 gttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaa 121  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||| | ||| |||||||    
T  5093048 gttgtgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttggtaaagcatttcaaa 5093123  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 5160483 - 5160414
Alignment:
Q  52 ccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaa 121  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| |||| ||||||| | ||| |||||||    
T  5160483 ccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaagcatttcaaa 5160414  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 5340657 - 5340754
Alignment:
Q  36 aggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaaca 133  Q
    ||||||||||||| | ||  | |||||| |||| || ||||| ||| |||||||||| ||||| |||||||||| ||| ||||||| |||||||||||    
T  5340657 aggacaagttgttctaccgatattctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaaca 5340754  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 5358131 - 5358040
Alignment:
Q  40 caagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaa 131  Q
    ||||||||| | ||||||||||||  |||||| || |||||||||||| |||| || || ||||| |||| ||| ||||||||||| |||||    
T  5358131 caagttgttttgccagtgttctacggtgtagatccatctgaagtacgtaatcaaactggtgagttcggaaaagcatttcaaagtctattgaa 5358040  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 5366610 - 5366704
Alignment:
Q  37 ggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaa 131  Q
    |||||| ||||| |||||||||||| | ||||||| || || ||||| |||||||| || || || || |||| ||| ||||||| |||||||||    
T  5366610 ggacaaattgttcttccagtgttcttcaatgtagatccatcggaagtccgtcatcaaaccggtgaattcggaaaagcatttcaaattcttttgaa 5366704  T

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Target: scaffold0864 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 4512 - 4613
Alignment:
Q  28 agaagcataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttt 127  Q
    |||| ||||||||||   ||||| || ||||| |||||| |||| || |||||||| || ||||||||||| ||||||||| || |||||||||||||||    
T  4512 agaaccataggacaaaaggttgtgcctgtgttttaccatttagaaccatctgaagtgcgccatcagacaggagagtttggagtatcttttcaaagtcttt 4611  T
Q  128 tg 129  Q
    ||    
T  4612 tg 4613  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 6501228 - 6501157
Alignment:
Q  46 gttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagctttt 117  Q
    ||||| |||||||||||| | ||||| |||||||||||||||||||||| |||  ||||||||| |||||||    
T  6501228 gttgtgccagtgttctacgaggtagatccctctgaagtacgtcatcagaaaggtaagtttggaaaagctttt 6501157  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 7889559 - 7889480
Alignment:
Q  47 ttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtctt 126  Q
    |||| |||||||||||  | ||||| ||||| |||||||||||||||||||| |||||||||| ||||||| || |||||    
T  7889559 ttgtgccagtgttctatgaggtagatccctcggaagtacgtcatcagacaggagagtttggaaaagcttttgaatgtctt 7889480  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 4332768 - 4332856
Alignment:
Q  55 gtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaacaaaattttaaa 143  Q
    ||||||||| ||||| | ||||| ||||| |||  ||| ||||| || ||||| | ||||||||||| ||||||||||| | |||||||    
T  4332768 gtgttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcaaaatcttttgaacagagttttaaa 4332856  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 22589092 - 22589018
Alignment:
Q  55 gtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttg 129  Q
    |||||||||||| |||| || |||||||| || ||||||||||| |||||||||||| ||||||  |||||||||    
T  22589092 gtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcttagtcttttg 22589018  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 48016127 - 48016030
Alignment:
Q  33 cataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttga 130  Q
    |||||| ||||| ||| | || ||||| ||| ||||||| || || |||||||||||||| |  || ||||| |||||||| ||||||| ||||||||    
T  48016127 cataggccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatcttttga 48016030  T

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