View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_high_4 (Length: 483)
Name: NF13752_high_4
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_high_4 |
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| [»] scaffold0721 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 31437064 - 31436600
Alignment:
| Q |
1 |
gcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaag |
100 |
Q |
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| T |
31437064 |
gcttggtcacattttacaccgttccaggtgcagaagttgctgctaattgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaag |
31436965 |
T |
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| Q |
101 |
tgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttctttcgg |
200 |
Q |
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| T |
31436964 |
tgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttctttcgg |
31436865 |
T |
|
| Q |
201 |
aaattgaggaatactagagcagaaagagtattatgaccaagctagccaccgctctgcaagcttgaaaggcagaagtgatgagtaattccaaccatatagt |
300 |
Q |
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| T |
31436864 |
aaattgagg--taatagagcagaaagagtattatgaccaagctagccaccgctctgcaagcttgaaaggcaaaagtgatgagtaattccaaccatatagt |
31436767 |
T |
|
| Q |
301 |
ctaatacgcaacaataagaaatgttttcaaggatcttgttaattaattgttgaaaaatctgtctttgactatcaatattaaattttgaattcaatcttca |
400 |
Q |
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| T |
31436766 |
ctaatacgcaacaataagaaatgttttcaaggatcttcttaattaattggtgcaaaatctatctttgactatcaatgttaaattttgaattcaatcttca |
31436667 |
T |
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| Q |
401 |
cagttcactaattagattggaatatttggaggtgttcacaccgtaatgcatgcaagagtattgttaa |
467 |
Q |
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| T |
31436666 |
cggttcactaattagattggaatatttggaggtgttcacaccgtaatgcatgcaagaggattgttaa |
31436600 |
T |
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Target: scaffold0721 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0721
Description:
Target: scaffold0721; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 6187 - 6256
Alignment:
| Q |
48 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
117 |
Q |
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| T |
6187 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
6256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 2706 - 2775
Alignment:
| Q |
48 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
117 |
Q |
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| T |
2706 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
2775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 15061353 - 15061284
Alignment:
| Q |
48 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
117 |
Q |
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| T |
15061353 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
15061284 |
T |
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