View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_high_5 (Length: 435)
Name: NF13752_high_5
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 40295813 - 40296016
Alignment:
| Q |
1 |
cagtgagaaattggagaatgtggactgggaggatgttatcactctcttggatgataacgaatggccagaaaatacaccaagtttcaggtacaaagcaaat |
100 |
Q |
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| T |
40295813 |
cagtgagaaattggagaatgtggactgggaggatgttatcactctcttggatgataacgaatggccagaaaatacaccaagtttcaggtacaaagcaaat |
40295912 |
T |
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| Q |
101 |
caaatgttctttccaagtaaaagttagtcaagcatattgatatcagaaagaacaccacctgtcatctcatgcatactctcttctgttatacattatactt |
200 |
Q |
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| T |
40295913 |
caaatgttctttccaagtaaaagttagtcaagcatattgatatcagaaagaacaccacctgtcatctcatgcatactctcttctgttatacattatactt |
40296012 |
T |
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| Q |
201 |
actc |
204 |
Q |
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|||| |
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| T |
40296013 |
actc |
40296016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 290 - 435
Target Start/End: Original strand, 40296113 - 40296259
Alignment:
| Q |
290 |
caagttctcttactcttgtttactaaaataggtgatttcaaaataacatctaaaattggaaagttttgaagagttgaaaccaatatac-ttttttaggat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40296113 |
caagttctcttactcttgtttactaaaataggtgatttcaaaataacatctaaaattggaaagttttgaagagttgaaaccaatatactttttttaggat |
40296212 |
T |
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| Q |
389 |
tcaaggacagcacttcaaaacatgctaagtgagaacatgacatgaca |
435 |
Q |
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| T |
40296213 |
tcaaggacagcacttcaaaacatgctaagtgagaacatgacatgaca |
40296259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 40296021 - 40296050
Alignment:
| Q |
198 |
cttactcaccaggaagaatttatttcttgt |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40296021 |
cttactcaccaggaagaatttatttcttgt |
40296050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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