View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_high_6 (Length: 422)
Name: NF13752_high_6
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 10330538 - 10330419
Alignment:
| Q |
13 |
attattctgcaatgaaatgttacacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctca |
112 |
Q |
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| T |
10330538 |
attatcctgcaatgaaatattagacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctca |
10330439 |
T |
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| Q |
113 |
acaccaatacctaactacat |
132 |
Q |
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| T |
10330438 |
acaccaatacctaactacat |
10330419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 10330421 - 10330317
Alignment:
| Q |
300 |
catcacctctcatactgctaaaaatattcttccaccaaatcgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
399 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10330421 |
catcacctctcataattctaaaaatattcttccaccaaattgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
10330322 |
T |
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| Q |
400 |
aaggt |
404 |
Q |
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| T |
10330321 |
aaggt |
10330317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 28827249 - 28827358
Alignment:
| Q |
201 |
cctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaataacattatacacaaatcatctccctccacttatctc |
300 |
Q |
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| T |
28827249 |
cctcctcatctaacaacgacacgtgccaaaacaaagtattagtacaatttcctattttcttagtaacattatccaaaaaccatctccctccattcacctc |
28827348 |
T |
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| Q |
301 |
atcacctctc |
310 |
Q |
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| T |
28827349 |
gtcacctctc |
28827358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 24781448 - 24781379
Alignment:
| Q |
194 |
tttaccacctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaa |
263 |
Q |
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| T |
24781448 |
tttaccacctccccacctagccacgactcatgccaggacaacgcttcactaccattttctattttcttaa |
24781379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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