View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_1 (Length: 694)
Name: NF13752_low_1
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Original strand, 14984217 - 14984865
Alignment:
| Q |
19 |
ctttcccttaaaccacgtataaaagtccaatgtctaggtaaaagagaaatgactcagctgtgaacagcaatttgaatctctgcaatcaatcctttatatt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984217 |
ctttccctcaaaccacgtataaaagtccaatgtctaggtaaaagagaaatgactcagctgtgaacagcaatttgaatctctgcaatcaatcctttatatt |
14984316 |
T |
|
| Q |
119 |
ttgcaatgttttgaaaaccagacaggttttgaaaaccagacagaatatcaaacctgcgagacttccggtcatggtaaaattggggttcaa---tagttga |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14984317 |
ttgcaatgttttgaaa------------------accagacagaatatcaaacctgcgagacttccggtcatggtaaaattggggttcaactatagttga |
14984398 |
T |
|
| Q |
216 |
accggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttgacagtgcagaagctttaaagattgtcagcattccca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984399 |
accggatgacaaataaataaaaggtattaaaaaagtacagtaagaacatggaaaaacgattttgacagtgcagaagctttaaagattgtcagcattccca |
14984498 |
T |
|
| Q |
316 |
tatcagtacgttcagcataccatctcttgtgcaccaacnnnnnnnncctctgtccaggtccatcaaccgacagagatggtaaattatggaatgatgtttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
14984499 |
tatcagtacgttcagcataccatctcttgtgcaccaacaaagaaaacctccgtccaggtccatcaaccgacagggatggtaaattatggaatgatatttg |
14984598 |
T |
|
| Q |
416 |
gaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctccnnnnnnnnggtattcattta |
515 |
Q |
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| T |
14984599 |
gaaggctcctatcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctccaaaaaaaaggtattcattta |
14984698 |
T |
|
| Q |
516 |
gacactgtatgccctctctgccactcatccatagaaaatgtgagccatctgtatatgaattgtaatctagcacgtttgtccttatttgcctcacctttag |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14984699 |
gacactgtatgccctctctgccactcatccatagaaaatgtgagccatctgtatatgaattgtaatctagcatgtttgtccttatttgcctcacctttag |
14984798 |
T |
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| Q |
616 |
gcatacaaccctctgtgaatgttgatctaaactgctggatcctagagtggctgaactgtgatgatgt |
682 |
Q |
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| T |
14984799 |
gcatacaaccccctgtgaatgttgatctaaactgctggatcctagagtggctgaactgtaatgatgt |
14984865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 495
Target Start/End: Complemental strand, 24553514 - 24553445
Alignment:
| Q |
426 |
atcccaaacaagatcaaaacttttatgtggagacttgctaaaaacattctgcccactagagcaaatctcc |
495 |
Q |
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||||||||||| ||||||| || |||||||| |||||||| || ||| ||||||||||| ||||||||| |
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| T |
24553514 |
atcccaaacaaaatcaaaaacttcatgtggaggcttgctaagaatattttgcccactagatcaaatctcc |
24553445 |
T |
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