View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_10 (Length: 417)
Name: NF13752_low_10
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_10 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34296207 - 34296440
Alignment:
| Q |
1 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
100 |
Q |
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| T |
34296207 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
34296306 |
T |
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| Q |
101 |
ggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296307 |
ggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
34296406 |
T |
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| Q |
201 |
aattctcagagacaaaattggtgtcattgatggt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34296407 |
aattctcagagacaaaattggtgtcattgatggt |
34296440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31347600 - 31347697
Alignment:
| Q |
1 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgt |
98 |
Q |
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| T |
31347600 |
cctacactattttgtgataatattggcacaacttacctatgttctaatctcgtatttcattcaagaatgaaacacattgccatggattatcactttgt |
31347697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24485818 - 24485583
Alignment:
| Q |
1 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
100 |
Q |
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| T |
24485818 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
24485719 |
T |
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| Q |
101 |
ggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485718 |
ggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
24485619 |
T |
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| Q |
201 |
aattctcagagac--aaaattggtgtcattgatggt |
234 |
Q |
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| T |
24485618 |
aattctcagagacaaaaaattggtgtcattgatggt |
24485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24494152 - 24493935
Alignment:
| Q |
1 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494152 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
24494053 |
T |
|
| Q |
101 |
ggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494052 |
ggcagaaggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
24493953 |
T |
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| Q |
201 |
aattctcagagacaaaat |
218 |
Q |
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| T |
24493952 |
aattctcagagacaaaat |
24493935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 58266 - 58037
Alignment:
| Q |
1 |
cctactcttttttgtgacaatattggcaccacttacttatgttccaatccggtatttcactctagaatgaagcatattgcacttgattatcattttgtga |
100 |
Q |
| |
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||||| |||||||| |||||||||||||| ||||| ||||| || ||| |||| |||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
58266 |
cctacacttttttgcgacaatattggcacaacttatttatgctctaattcggtctttcactcaagaatgaagcacattgcacttgattatcactttgtga |
58167 |
T |
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| Q |
101 |
ggcagatggttcaacttggtaaaattcgagtctcacatatatctacaaaggatcaacttgcagacattttaacaaaacctctacatcgcaccagattttc |
200 |
Q |
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| T |
58166 |
ggcagcaagttcaaaatggaaaactcatagtctctcacatctcttcaaagaatcaccttgcagacattctgactaagccattgcatcgcacaaggttttc |
58067 |
T |
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| Q |
201 |
aattctcagagacaaaattggtgtcattga |
230 |
Q |
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| |||||||||||||||| ||||||||||| |
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| T |
58066 |
acttctcagagacaaaataggtgtcattga |
58037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 7707475 - 7707534
Alignment:
| Q |
297 |
tttctgtctgccaaagttgttcgtgagcttcattctcctatgatttcttcgtaaaaatag |
356 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
7707475 |
tttctgtctaccaaagttgttcgtaagcttcattctcctatgatttcttagtaaaaatag |
7707534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 38569621 - 38569673
Alignment:
| Q |
34 |
tacttatgttccaatccggtatttcactctagaatgaagcatattgcacttga |
86 |
Q |
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| T |
38569621 |
tacttatgctctaatccagtttttcactctcgaatgaagcatatcgcacttga |
38569673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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