View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_11 (Length: 352)
Name: NF13752_low_11
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_11 |
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| [»] scaffold0779 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 4368729 - 4368409
Alignment:
| Q |
22 |
tggaaatgaatgaattgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368729 |
tggaaatgaatgaattgaattttggaggaggtgatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
4368630 |
T |
|
| Q |
122 |
ttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368629 |
ttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtca |
4368530 |
T |
|
| Q |
222 |
cagtacaagacatgttgtctggtgcatttgatgttaaaattctttagaagatatagtagcagtaaacaatgctctatactcatcctcttaagatgatctt |
321 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4368529 |
cagtacaagacatgttgtctggtgcatttgatgttaaaattctttagaagatatagtagcagtaaacaatgttctatactcatcctcttaagatgatctt |
4368430 |
T |
|
| Q |
322 |
gatattgtccgttgtttctta |
342 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4368429 |
gatattgtccgttgtttctta |
4368409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 13355376 - 13355333
Alignment:
| Q |
17 |
catcatggaaatgaatgaattgaattttggaggaggtaatgctt |
60 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||||||||||| |
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| T |
13355376 |
catcttggaaatggaagaattgaattttggaggaggtaatgctt |
13355333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 15451029 - 15450965
Alignment:
| Q |
159 |
aagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtcaca |
223 |
Q |
| |
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|||||||| || ||||||| ||||| ||||||| ||||||||||| |||||| ||| ||||||| |
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| T |
15451029 |
aagtgcttggttctttcatgaaaaactggattagcagctatgtgaagtgcactttggttgtcaca |
15450965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 18497673 - 18497876
Alignment:
| Q |
35 |
attgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattcctttttgaattttctct |
134 |
Q |
| |
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|||||| |||||||| | ||| | ||||||| ||||||||||||| ||||| || || ||||| ||||| | ||||||| |||| |||||||||| |
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| T |
18497673 |
attgaactttggaggtgctaaaggctttgttaaaaaatctgctagctgttcatgtgttgagataggaagaagtctaagcattccctttttaattttctct |
18497772 |
T |
|
| Q |
135 |
ctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtcacagtacaagacat |
234 |
Q |
| |
|
|||||||| ||| ||||||| || || |||||||| || |||| |||||||||||| |||| || ||||||||||| || |||||||| ||||| ||| |
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| T |
18497773 |
ctaaccaaatggcagtctatttccaaatgctttgttctctcatgaaaaattggatttgaagcaatatgaattgcactttgactgtcacaatacaaaacag |
18497872 |
T |
|
| Q |
235 |
gttg |
238 |
Q |
| |
|
|||| |
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|
| T |
18497873 |
gttg |
18497876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 26359324 - 26359540
Alignment:
| Q |
22 |
tggaaatgaatgaattgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
121 |
Q |
| |
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|||| |||||| |||||| |||||||| | ||| | ||||||| ||||||||||| | ||||| || || ||||| ||||| | ||||||| || |
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|
| T |
26359324 |
tggatatgaattgattgaactttggaggtgctaaaggctttgttaaaaaatctgctagttgttcatgtgttgagataggaagaagtctaagcattccctt |
26359423 |
T |
|
| Q |
122 |
ttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtca |
221 |
Q |
| |
|
|| |||||||||||||||||| ||| ||||||| ||||| |||| ||| || |||| ||||| |||||| |||| || ||||||||||| || |||||| |
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| T |
26359424 |
tttaattttctctctaaccaaatggcagtctatttctaaatgctctgttctctcatgaaaaactggatttgaagcaatatgaattgcactttgactgtca |
26359523 |
T |
|
| Q |
222 |
cagtacaagacatgttg |
238 |
Q |
| |
|
|| ||||| ||| |||| |
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| T |
26359524 |
caatacaaaacaggttg |
26359540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 25573681 - 25573897
Alignment:
| Q |
22 |
tggaaatgaatgaattgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
121 |
Q |
| |
|
|||| |||||| |||||| |||||||| | ||| | ||||||| ||||||||||||| ||||| || || ||||| ||||| | ||||||| || |
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|
| T |
25573681 |
tggatatgaattgattgaactttggaggtgctaaaggctttgttaaaaaatctgctagctgttcatgtgttgagataggaagaagtctaagcattccctt |
25573780 |
T |
|
| Q |
122 |
ttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtca |
221 |
Q |
| |
|
|| |||||||||||||||||| ||| ||||||| || || |||||||| || |||| ||||| |||||| |||| || ||||||||||| || |||||| |
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| T |
25573781 |
tttaattttctctctaaccaaatggcagtctatttccaaatgctttgttctctcatgaaaaactggatttgaagcaatatgaattgcactttgactgtca |
25573880 |
T |
|
| Q |
222 |
cagtacaagacatgttg |
238 |
Q |
| |
|
|| ||||| ||| |||| |
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| T |
25573881 |
caatacaaaacaggttg |
25573897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 3856379 - 3856247
Alignment:
| Q |
22 |
tggaaatgaatgaattgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
121 |
Q |
| |
|
|||| |||||| |||||| |||||||| | ||| | ||||||| ||||||||||||| ||||| || || ||||| ||||| | ||||||| || |
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|
| T |
3856379 |
tggatatgaattgattgaactttggaggtgctaaaggctttgttaaaaaatctgctagctgttcatgtgttgagataggaagaagtctaagcattccctt |
3856280 |
T |
|
| Q |
122 |
ttgaattttctctctaaccaagtggaagtctat |
154 |
Q |
| |
|
|| |||||||||||||||||| ||| ||||||| |
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|
| T |
3856279 |
tttaattttctctctaaccaaatggcagtctat |
3856247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 2998734 - 2998680
Alignment:
| Q |
193 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
247 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
2998734 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
2998680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 6235 - 6019
Alignment:
| Q |
22 |
tggaaatgaatgaattgaattttggaggaggtaatgcttttgttaggaaatctgctagctcttcatcagtagaaataggtagaagcttgggcattccttt |
121 |
Q |
| |
|
|||| |||||| |||||| |||||||| | ||| | ||||||| ||||||||||||| ||||| || || ||||| ||||| | ||||||| || |
|
|
| T |
6235 |
tggatatgaattgattgaactttggaggtgctaaaggctttgttaaaaaatctgctagctgttcatgtgttgagataggaagaagtctaagcattccctt |
6136 |
T |
|
| Q |
122 |
ttgaattttctctctaaccaagtggaagtctatctctaagtgctttgtcctttcataaaaaattggattaaaagctatgtgaattgcactctggctgtca |
221 |
Q |
| |
|
|| || ||||||||||||||| ||| ||||||| || | |||||||| || || | ||||| |||||| |||| || ||||||||||| || || ||| |
|
|
| T |
6135 |
tttaagtttctctctaaccaaatggcagtctatttccagatgctttgttctctcgtgaaaaactggatttgaagcaatatgaattgcactttgactatca |
6036 |
T |
|
| Q |
222 |
cagtacaagacatgttg |
238 |
Q |
| |
|
|| ||||| ||| |||| |
|
|
| T |
6035 |
caatacaaaacaggttg |
6019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 34826028 - 34825974
Alignment:
| Q |
193 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
247 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
34826028 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
34825974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 37194308 - 37194254
Alignment:
| Q |
193 |
aagctatgtgaattgcactctggctgtcacagtacaagacatgttgtctggtgca |
247 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || ||| |||||||| |||| |
|
|
| T |
37194308 |
aagctatgtgaattgcactctgactatcacagtataacacaggttgtctgatgca |
37194254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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