View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_15 (Length: 311)
Name: NF13752_low_15
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 16610157 - 16610275
Alignment:
| Q |
156 |
attgagaattttcctaagtggtaggggtccgtaggagatgaacggattgaggagagaatggaacgacatagttttggatataatgttgatttgcatgctt |
255 |
Q |
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| T |
16610157 |
attgagaattttcctaagtggtaggggtccgtaggagaggaacggattgaggagagaatggaacgacatagttttggatataatgttgatttgcatgctt |
16610256 |
T |
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| Q |
256 |
tggaagaagaggtagaagt |
274 |
Q |
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| T |
16610257 |
tggaagaagaggtagaagt |
16610275 |
T |
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Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16610002 - 16610094
Alignment:
| Q |
1 |
ctaactctaagtaatctacattgagctggtttagttcactacaatcatctagtgccgcgatttcggcatggttaagagaagtagagtggtgat |
93 |
Q |
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| T |
16610002 |
ctaactctaagtaatctacattgagctggtttagttcactacaatcatctagtgccgcgatttcggcatggttaagagaagtagagtgatgat |
16610094 |
T |
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