View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_2 (Length: 594)
Name: NF13752_low_2
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 157 - 578
Target Start/End: Original strand, 38709008 - 38709429
Alignment:
| Q |
157 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatata |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709008 |
atactaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatata |
38709107 |
T |
|
| Q |
257 |
aaggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38709108 |
aaggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccgtgtggaaaagaatggagagattgttaatg |
38709207 |
T |
|
| Q |
357 |
ctgaaactgggatgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatgaggtcattggtgatgatgaaatcga |
456 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38709208 |
ctgaaactggggtgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatgaggtcattggtgatgatgaaacgga |
38709307 |
T |
|
| Q |
457 |
agattaagctttattagttgtaactaagtttttaagtgaatgtcttgggctatgtcactttagttcttgaatgcatcgaacttgcaaacatattcacaag |
556 |
Q |
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| T |
38709308 |
agattaagctttattagttgtaactaagtttttaagtgaatgtcttgggctatgtcactttagttcttgaatgcatcgaaattgcaaacatattcacaag |
38709407 |
T |
|
| Q |
557 |
tatctcttttattagttctttt |
578 |
Q |
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|||||||||||||||||||||| |
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| T |
38709408 |
tatctcttttattagttctttt |
38709429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 159 - 470
Target Start/End: Original strand, 10047050 - 10047358
Alignment:
| Q |
159 |
actaactatgttatattattgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaa |
258 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
10047050 |
actaactatgttttattgttgtgtaggtgtacggtgctagaccaatttg---gtggcttgagaagaatgtggtgacagagctatctatgatgcttataag |
10047146 |
T |
|
| Q |
259 |
ggaaaaaattgatgagaacacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgct |
358 |
Q |
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|||| ||||||||||||| |||||||| | |||||||| |||||||||||||||||| ||| ||||| ||| ||||||||||||| |||||| |||||| |
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| T |
10047147 |
ggaagaaattgatgagaatacaactgtttgcattgatgctggtcctaagggaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgct |
10047246 |
T |
|
| Q |
359 |
gaaactgggatgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatgaggtcattggtgatgatgaaatcgaag |
458 |
Q |
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||||||||| ||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
10047247 |
gaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcattggcgatgatgaaatggaag |
10047346 |
T |
|
| Q |
459 |
attaagctttat |
470 |
Q |
| |
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| |||||||||| |
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| T |
10047347 |
agtaagctttat |
10047358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 38708876 - 38708937
Alignment:
| Q |
25 |
ggctaaaatcaaatattctacatattctggcctacaactgcaagtaccaaataaaacatttt |
86 |
Q |
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| T |
38708876 |
ggctaaaatcgaatattctacatattctggcctacaactgcaagtaccaaataaaacatttt |
38708937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 10047360 - 10047422
Alignment:
| Q |
517 |
tagttcttgaatgcatcgaacttgcaaacatat-tcacaagtatctcttttattagttctttt |
578 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||| |||| |||| |
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| T |
10047360 |
tagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttatcagttgtttt |
10047422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 177 - 396
Target Start/End: Original strand, 45468757 - 45468976
Alignment:
| Q |
177 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
276 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||| || || ||| |||| |||| ||| ||||||||||||| |
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| T |
45468757 |
ttgtataggtgtatggagctagaccaatcagaagatggctagagaagaaggtggtgacagaactctctaggatgctcataagagaagaaattgatgagaa |
45468856 |
T |
|
| Q |
277 |
cacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgctgaaactgggatgaagtca |
376 |
Q |
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| T |
45468857 |
tacaacggtttacatagatgctggtcctaagggaagcgatttggcataccgtgtagaaaagaatggagggattgttaatgctgaaactggggtgaagtct |
45468956 |
T |
|
| Q |
377 |
gatattttgatacagatacc |
396 |
Q |
| |
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||||| ||||| |||||||| |
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| T |
45468957 |
gatatattgattcagatacc |
45468976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 180 - 410
Target Start/End: Complemental strand, 739747 - 739517
Alignment:
| Q |
180 |
tgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaacac |
279 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||| ||| |||| ||||| |||| |||||||||| || || |
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| T |
739747 |
tgtaggtgtatggtgctagatcaattagaaggtggcttgagaagaaggtagtgacagagctgtctaggatgcttataagggaagaaattgatgaaaatac |
739648 |
T |
|
| Q |
280 |
aactgtatacattgatgttggtcctaagggaagtgacttgtcataccatgtggaaaagaatggagagattgttaatgctgaaactgggatgaagtcagat |
379 |
Q |
| |
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||| || ||||| |||| || |||||| ||||||| ||| | ||| || ||||| | || |||||||||||||||||||| ||| ||||||| ||| |
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| T |
739647 |
aacagtttacatcgatgctgatcctaatggaagtggtttggtacaccgtgcagaaaatagtgaagagattgttaatgctgaaatcggggtgaagtcggat |
739548 |
T |
|
| Q |
380 |
attttgatacagataccaacttgaccaaaaa |
410 |
Q |
| |
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|||||||| |||||| ||| | ||||||||| |
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| T |
739547 |
attttgattcagataacaaatggaccaaaaa |
739517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 741882 - 741757
Alignment:
| Q |
177 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| ||||| | |||| || | || |||||||||||| |
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| T |
741882 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggtgacagtgctgtctatgct-tatacaaggaaagtaattgatgagaa |
741784 |
T |
|
| Q |
277 |
cacaactgtatacattgatgttggtcc |
303 |
Q |
| |
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||||| || ||||||||||||||||| |
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| T |
741783 |
tacaacggtttacattgatgttggtcc |
741757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 42449025 - 42448972
Alignment:
| Q |
180 |
tgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtga |
233 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
42449025 |
tgtaggtgtatggtgctagaccaattagaagctggcttgagaaaaaggtggtga |
42448972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 25078815 - 25078763
Alignment:
| Q |
520 |
ttcttgaatgcatcgaacttgcaaacatattcacaagtatctcttttattagt |
572 |
Q |
| |
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|||||||||| |||||| ||||||||| || ||| ||| |||||||||||||| |
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|
| T |
25078815 |
ttcttgaatgtatcgaaattgcaaacacatccacgagtgtctcttttattagt |
25078763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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