View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_23 (Length: 255)
Name: NF13752_low_23
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 24234579 - 24234770
Alignment:
| Q |
11 |
tccaagaatattaagagtccgttaatacaagaa-tgtataaccctaattatcactcaccaaagttgttgtaaaagtcgtaatatgcttaaaattctatcg |
109 |
Q |
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| T |
24234579 |
tccaaaaatattaagagtccgttaatacaagaagtgtataaccctaattatcactcaccaaagttgttgtaaaagtcgtaatacgcttggaattctatcg |
24234678 |
T |
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| Q |
110 |
atacagttataa---tagttgnnnnnnncaaaagtatgatgttagcacttggcatcggggtcataagagagtttaaatctaacacgtatttg |
198 |
Q |
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|||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24234679 |
atacagttataaatctagttgaaaaaaacaaaagtatgatgttggcacttggcatcggggtcataagagagtttaaatctaacacgtatttg |
24234770 |
T |
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