View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13752_low_26 (Length: 236)

Name: NF13752_low_26
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13752_low_26
NF13752_low_26
[»] chr5 (3 HSPs)
chr5 (1-130)||(19900762-19900892)
chr5 (38-90)||(19900913-19900965)
chr5 (177-221)||(19901062-19901106)
[»] chr6 (1 HSPs)
chr6 (38-89)||(3582503-3582554)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 19900762 - 19900892
Alignment:
Q  1 taacaagtaataatgtcattcttcattcattcaacagaaacaaactaacattctgatatatctttctgtcaagacaattcattattttt-ccagaagcaa 99  Q
    |||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  19900762 taacaagtaataatttcatacttcattcatttaagagaaacaaactaacattctgatatatctttctgtcaagacaattcaatatttttcccagaagcaa 19900861  T
Q  100 cattcttatattgtgttcaccgcttgcctat 130  Q
    ||||||||||  ||||||||  |||||||||    
T  19900862 cattcttataccgtgttcactacttgcctat 19900892  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 19900913 - 19900965
Alignment:
Q  38 aaacaaactaacattctgatatatctttctgtcaagacaattcattatttttc 90  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  19900913 aaacaaactaacattctgatatatcttcatgtcaagacaattcattatttttc 19900965  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 19901062 - 19901106
Alignment:
Q  177 gagaattgaaattgtagtgctcatatgtgcttaacaattaaacat 221  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  19901062 gagaattgaaatggtagtactcatatgtgcttaacaattaaacat 19901106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 3582554 - 3582503
Alignment:
Q  38 aaacaaactaacattctgatatatctttctgtcaagacaattcattattttt 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3582554 aaacaaactaacattctgatatatcttcctgtcaagacaattcattattttt 3582503  T

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