View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_28 (Length: 217)
Name: NF13752_low_28
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 47049121 - 47048950
Alignment:
| Q |
1 |
ctgacagtgtacaacatgcatcaattctgagtctaacgtgaagaaaactttcttctgccttggatcaaatccacaaccaatcaccttatctgttccaatc |
100 |
Q |
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| T |
47049121 |
ctgacagtgtacaacatgcatcaattctgagtctaacgtgaagaaaactttcttctgccttggatcaaatccacaaccaatcaccttatctgttccaatc |
47049022 |
T |
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| Q |
101 |
cactctgccttctcagattcgaatacaagtttcattcctgtaaccaaacttcacactttgatgtctcaaaaa |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47049021 |
cactctgccttctcagattcgaatacaagtttcattcctgtaaccaaacttcacactttgatgtctcaaaaa |
47048950 |
T |
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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 5655386 - 5655520
Alignment:
| Q |
14 |
acatgcatcaattctgagtctaacgtgaagaaaactttcttctgccttggatcaaatccacaaccaatcaccttatctgttccaatccactctgccttct |
113 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| | ||| | ||| |||| |
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| T |
5655386 |
acatgcaccaattctgagtctaatgtgaagaaaactttcttttgccttggatcaaatccacaaccaattactgtatcagttcctacccattgtgctttct |
5655485 |
T |
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| Q |
114 |
cagattcgaatacaagtttcattcctgtaaccaaa |
148 |
Q |
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|||| || ||||||||||||||||||||||||||| |
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| T |
5655486 |
cagactcaaatacaagtttcattcctgtaaccaaa |
5655520 |
T |
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