View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_3 (Length: 500)
Name: NF13752_low_3
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 201 - 485
Target Start/End: Complemental strand, 46063521 - 46063237
Alignment:
| Q |
201 |
atgttatacacttactattaatctattcatttgttgaggatttttgttgagtatcaacaatcttactatgtttggattttggaatgtaagacttataaat |
300 |
Q |
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| T |
46063521 |
atgttacacacttactattaatctattcatttgatgaggatttttgttgagtatcaacaatcttactatgtttggattttggaatgtaagacttataaat |
46063422 |
T |
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| Q |
301 |
gctttttcaagaatcttgagcataagannnnnnnnnctccctttgtagttgtgcataggcaagggagctaattcaacctttcaaaactatttttacaatt |
400 |
Q |
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| T |
46063421 |
gctttttcaagaatcttgagcataagatttttttttctccctttgtagttgtgcataggcaagggagctaattcaacctttcaaaactatttttacaatt |
46063322 |
T |
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| Q |
401 |
tacttgcattcacacttttctgaatgattgagcttgaattttttatccaaaagtttcaatgacttttgagtcaatgttatgaata |
485 |
Q |
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| T |
46063321 |
tacttgcattcacacttttctgaatgattgagcttgaattttttatccaaaagtttcaatgacttttgagtcaatgttatgaata |
46063237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 46063765 - 46063578
Alignment:
| Q |
1 |
attgtaatgtctaccgctataaccatgagcaaagaatgttttctttaggtttgaaggcgcacttaccgctgaagcccgtgctgctttcctaaatattgaa |
100 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
46063765 |
attgtaatgtcaaccgctataaccatgaacaaagaatgttttctttaggtttgaaggcgcacgtaccgctgaagcccttgctgctttcctaaatattgaa |
46063666 |
T |
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| Q |
101 |
gtaggtatttaagtgaattgttac---------tattgagttatgttgttgtttgctttctatttattcattctcttattgtgcatga |
179 |
Q |
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| T |
46063665 |
ggaggtatttaagtgaattgttacttttctacttattgagttatgttgttgtttgctttctatttattcattctcttattgtgcatga |
46063578 |
T |
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