View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13752_low_4 (Length: 492)

Name: NF13752_low_4
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13752_low_4
NF13752_low_4
[»] chr1 (20 HSPs)
chr1 (14-336)||(3877485-3877803)
chr1 (224-389)||(32066805-32066967)
chr1 (200-398)||(32083255-32083453)
chr1 (396-476)||(3877409-3877487)
chr1 (200-389)||(35828903-35829092)
chr1 (239-394)||(28528159-28528314)
chr1 (275-389)||(40419264-40419378)
chr1 (200-325)||(51441274-51441399)
chr1 (200-325)||(7921574-7921699)
chr1 (200-316)||(19936177-19936294)
chr1 (200-284)||(51234302-51234386)
chr1 (238-297)||(12807635-12807694)
chr1 (200-326)||(1210391-1210517)
chr1 (200-325)||(27445545-27445670)
chr1 (347-399)||(7814067-7814119)
chr1 (275-380)||(16273417-16273519)
chr1 (200-398)||(8671494-8671692)
chr1 (200-326)||(43240891-43241017)
chr1 (200-326)||(51601704-51601830)
chr1 (288-394)||(52421008-52421114)
[»] chr4 (22 HSPs)
chr4 (246-399)||(10775975-10776128)
chr4 (200-326)||(27450683-27450809)
chr4 (275-386)||(33369356-33369464)
chr4 (200-389)||(41427422-41427610)
chr4 (200-398)||(31960324-31960522)
chr4 (215-400)||(20917554-20917739)
chr4 (237-394)||(39708035-39708192)
chr4 (234-375)||(47265748-47265889)
chr4 (200-326)||(435875-436001)
chr4 (200-298)||(3273096-3273194)
chr4 (302-400)||(25867163-25867261)
chr4 (200-326)||(33226855-33226981)
chr4 (200-326)||(48623037-48623163)
chr4 (200-313)||(1629090-1629203)
chr4 (239-330)||(39754920-39755011)
chr4 (199-326)||(56374936-56375063)
chr4 (200-326)||(1777525-1777651)
chr4 (200-326)||(23906811-23906937)
chr4 (224-389)||(17666572-17666732)
chr4 (265-329)||(25597933-25597997)
chr4 (347-399)||(55769034-55769086)
chr4 (347-399)||(55833290-55833342)
[»] chr3 (17 HSPs)
chr3 (200-391)||(48221365-48221556)
chr3 (200-391)||(25190960-25191151)
chr3 (239-400)||(44395002-44395163)
chr3 (264-395)||(19757645-19757776)
chr3 (277-389)||(43111606-43111715)
chr3 (224-325)||(27917219-27917320)
chr3 (301-389)||(1448224-1448312)
chr3 (240-380)||(32490274-32490414)
chr3 (200-326)||(38849740-38849866)
chr3 (200-326)||(47542221-47542347)
chr3 (200-398)||(51448219-51448417)
chr3 (301-398)||(30724411-30724508)
chr3 (301-389)||(1470708-1470796)
chr3 (237-400)||(15750810-15750973)
chr3 (346-397)||(19757559-19757610)
chr3 (223-314)||(26489975-26490066)
chr3 (276-401)||(26592022-26592147)
[»] chr5 (17 HSPs)
chr5 (200-398)||(3394285-3394482)
chr5 (200-398)||(3301423-3301621)
chr5 (200-398)||(20318565-20318763)
chr5 (264-381)||(25937662-25937780)
chr5 (243-388)||(6368478-6368623)
chr5 (216-389)||(43558340-43558513)
chr5 (200-326)||(12492897-12493023)
chr5 (332-386)||(35685437-35685491)
chr5 (200-389)||(1274848-1275037)
chr5 (239-316)||(27302496-27302573)
chr5 (238-373)||(16347950-16348085)
chr5 (200-326)||(2075984-2076110)
chr5 (200-326)||(10638943-10639069)
chr5 (244-333)||(21363013-21363102)
chr5 (236-316)||(17341747-17341827)
chr5 (301-389)||(23979815-23979903)
chr5 (200-316)||(24178180-24178296)
[»] chr6 (9 HSPs)
chr6 (200-399)||(5258660-5258859)
chr6 (204-398)||(10100371-10100565)
chr6 (197-385)||(7079728-7079909)
chr6 (200-316)||(9706432-9706548)
chr6 (200-385)||(20428146-20428331)
chr6 (200-398)||(5631391-5631590)
chr6 (264-375)||(3632613-3632724)
chr6 (346-388)||(2680706-2680748)
chr6 (197-297)||(8811840-8811940)
[»] chr7 (15 HSPs)
chr7 (200-398)||(38606580-38606777)
chr7 (246-398)||(32630181-32630333)
chr7 (216-316)||(24177721-24177821)
chr7 (307-387)||(24436514-24436594)
chr7 (242-389)||(43793592-43793739)
chr7 (200-398)||(37616490-37616688)
chr7 (200-326)||(46356361-46356487)
chr7 (200-326)||(11593606-11593732)
chr7 (200-398)||(33350316-33350514)
chr7 (200-326)||(36651640-36651766)
chr7 (275-316)||(18608275-18608316)
chr7 (275-316)||(18626562-18626603)
chr7 (275-316)||(18637236-18637277)
chr7 (275-316)||(18650671-18650712)
chr7 (237-326)||(49028913-49029002)
[»] chr2 (16 HSPs)
chr2 (200-398)||(11992616-11992814)
chr2 (200-326)||(45368134-45368259)
chr2 (200-398)||(24584116-24584314)
chr2 (200-326)||(38453130-38453256)
chr2 (201-398)||(41763560-41763757)
chr2 (225-389)||(7789074-7789238)
chr2 (203-399)||(37281680-37281878)
chr2 (200-398)||(2610102-2610300)
chr2 (276-356)||(12904584-12904664)
chr2 (200-326)||(4807238-4807364)
chr2 (331-387)||(14769884-14769940)
chr2 (200-389)||(8180363-8180552)
chr2 (200-316)||(452132-452248)
chr2 (276-360)||(23866267-23866351)
chr2 (200-326)||(13148959-13149085)
chr2 (301-389)||(13592959-13593047)
[»] scaffold0606 (1 HSPs)
scaffold0606 (239-360)||(9269-9390)
[»] chr8 (13 HSPs)
chr8 (243-389)||(38667142-38667286)
chr8 (236-399)||(41444849-41445013)
chr8 (200-389)||(36544735-36544924)
chr8 (200-316)||(4033004-4033120)
chr8 (239-386)||(25985128-25985273)
chr8 (224-389)||(33830767-33830929)
chr8 (200-315)||(42854514-42854629)
chr8 (200-326)||(36565751-36565877)
chr8 (216-270)||(18124878-18124932)
chr8 (275-329)||(18849700-18849754)
chr8 (269-389)||(28300687-28300803)
chr8 (237-326)||(12492389-12492478)
chr8 (344-400)||(13984202-13984258)
[»] scaffold0024 (1 HSPs)
scaffold0024 (204-316)||(82377-82489)
[»] scaffold0570 (1 HSPs)
scaffold0570 (200-326)||(2780-2906)
[»] scaffold0220 (1 HSPs)
scaffold0220 (332-387)||(24863-24918)
[»] scaffold0113 (1 HSPs)
scaffold0113 (237-316)||(12145-12224)
[»] scaffold0896 (1 HSPs)
scaffold0896 (197-297)||(4286-4386)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 3877803 - 3877485
Alignment:
Q  14 attatactccctcttctcatgttcttcttttaactttaaatgggtccggcaaatgattgatgagattgaaccccgatttgtccgttcatggactagttac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||    
T  3877803 attatactccctcttctcatgttcttcttttaactttaaatgggtccggcaaatgatcgatgagattgaaccccgatatgtcggttcatggactagatac 3877704  T
Q  114 cgaatcaaacattttcgtattaaatggggtcggcttatgttaccatgtttaatcataaaccatatttccattaaactcattcattaatttcaaccaccca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||    ||||||||||||| ||||||    
T  3877703 cgaatcaaacattttcgtattaaatggggtcggcttatgttaccatgtttaatcataaaccatatttcggttcaac----tcattaatttcaagcaccca 3877608  T
Q  214 tattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3877607 tattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatataatctc 3877508  T
Q  314 caatttttacctctaaaatagaa 336  Q
    |||||||||||||||||| ||||    
T  3877507 caatttttacctctaaaacagaa 3877485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 389
Target Start/End: Original strand, 32066805 - 32066967
Alignment:
Q  224 gatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttac 323  Q
    ||||| ||| |||||||| ||||||||  || |||| || |||| |||||  ||||||||| ||||||| ||||   |||||||||||||||||||| ||    
T  32066805 gatgatttacatttgcttttatttctctgtcattttgtactatgaacccaaaatatttaaactgtgtaacttgt---atgatatgatctccaattttcac 32066901  T
Q  324 ctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    ||||||  ||||| || |||  ||||||||||||||| ||| ||||||||||||| ||||||||||    
T  32066902 ctctaaggtagaactacttcaccttttgctaaaattacattacatatactatgtcatgcttctact 32066967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 32083255 - 32083453
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| |||||| ||||||||||| || |||| || |||||||||| ||||||||||||||| || ||| |     
T  32083255 atttcaaccacccagcttgaatacgatgatttacatttgcctctatttctccgtcattttgtactatggacccaagatatttaaattgtgcaacttgggg 32083354  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||   | |||  |||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||    
T  32083355 tatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaa 32083453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 396 - 476
Target Start/End: Complemental strand, 3877487 - 3877409
Alignment:
Q  396 gaagttgtgtgtttttaaggtttatctccaacctcctattcaatgctccaagtaggactgcatcattttcaaaaaacatac 476  Q
    |||||||||||||||||| | ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  3877487 gaagttgtgtgtttttaaagcttatctccaacctcct--tcaatgctccaagtagaactgcatcattttcaaaaaacatac 3877409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 200 - 389
Target Start/End: Original strand, 35828903 - 35829092
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||| || || ||||| ||||| ||| || ||||||||||||||| ||| ||| || |||||||||| ||| |||||   | |||| |||||     
T  35828903 atttcaaccacacagatcgaattcgatgatttacatatgcttctatttctccgtcgctttgtactatggacccaagatgtttaagcagcgtaacttgtgg 35829002  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     ||||||||||||| |  ||| ||||| ||  ||||| || |  ||||||||||||||||| |||||||||||| |||||||||| ||||    
T  35829003 tatgatatgatctctagctttcacctccaaggtagaactactatgtcttttgctaaaattacatttcatatactttgtcttgcttgtact 35829092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 28528314 - 28528159
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaat 338  Q
    ||||||||||||||| ||||| ||  || |||||| |||||||||| ||||||| |||||  ||| |||||||||||| ||| |||||||   ||||||     
T  28528314 cttctatttctccattgttttgtaacatagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaac 28528215  T
Q  339 aattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggc 394  Q
      |||| || ||||||||| |||||  |||||||| ||||||||||||||| ||||    
T  28528214 gcttcgcctcttgctaaaactatatcccatatactttgtcttgcttctactcaggc 28528159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 389
Target Start/End: Complemental strand, 40419378 - 40419264
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatacta 374  Q
    |||||||||| ||||||| |||||  |||||||||||||||| ||| |||| ||   |||||||  || | ||||||||||||||| ||| |||||||||    
T  40419378 gatatttaaactgtgtaacttgtggtatgatatgatctccaactttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatacta 40419279  T
Q  375 tgtcttgcttctact 389  Q
    |||| ||||||||||    
T  40419278 tgtcgtgcttctact 40419264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 51441274 - 51441399
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||| |  |||||| |||||||||| ||||||| ||| |     
T  51441274 atttcaaccacccagcttgaatatgatggcttagatctgcttctatttctccgtcattttgtatgaaagacccaagatatttaaactgtgtaacttgggg 51441373  T
Q  300 aatgatatgatctccaatttttacct 325  Q
     |||||||||||||||| ||| ||||    
T  51441374 tatgatatgatctccaactttcacct 51441399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 7921699 - 7921574
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    |||||||| |||||  ||||||| ||||  ||| || | |||||||||||| |||||||| || |||||| ||| ||||| ||||| |||||| |||||     
T  7921699 atttcaacaacccaacttgaattcgatggtttacatctccttctatttctcaatcgttttgtactatggatccaagatatataaatcgtgtaacttgtgg 7921600  T
Q  300 aatgatatgatctccaatttttacct 325  Q
     | |||||||||||||| ||| ||||    
T  7921599 taagatatgatctccaactttcacct 7921574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 19936294 - 19936177
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatc-gttttatattatggacccatgatatttaaattgtgtaatttgtg 298  Q
    ||||||||||||||  ||||||  ||||| ||| || ||||||||||||||| ||  |||| ||||||||||||| ||||||||||   ||||| ||| |    
T  19936294 atttcaaccacccagcttgaatacgatgatttacatatgcttctatttctccttcatttttgtattatggacccaagatatttaaaccatgtaacttggg 19936195  T
Q  299 aaatgatatgatctccaa 316  Q
      ||||||||||||||||    
T  19936194 gtatgatatgatctccaa 19936177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 51234386 - 51234302
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaa 284  Q
    ||||||||||||||  ||||||||||||| ||| || |||||| ||||||||||| ||||  | ||||||| || ||||||||||    
T  51234386 atttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttgcactatggactcaagatatttaaa 51234302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 12807635 - 12807694
Alignment:
Q  238 gcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgt 297  Q
    |||||||||||| | |||||||||| |||||| ||| |||||||||||||||||| ||||    
T  12807635 gcttctatttcttcgtcgttttatactatggatccaagatatttaaattgtgtaacttgt 12807694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 1210517 - 1210391
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||| |||||||||||| |||| ||  |  |||||| |||||||||| ||||||| ||| |     
T  1210517 atttcaaccacccagcttgaatacgatggcttacatctgcttttatttctccatcattttgtacgaaagacccaagatatttaaactgtgtaacttgggg 1210418  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  1210417 tatgatatgatctccaactttcacctc 1210391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 27445670 - 27445545
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    |||||||||| |||  ||||||  ||||| ||| || |||||||||||||||||| |||| || ||||||||||  ||| |||||  |||||| ||| |     
T  27445670 atttcaaccaaccaacttgaatacgatgatttacatctgcttctatttctccatcattttgtactatggacccaacataattaaaccgtgtaacttgggg 27445571  T
Q  300 aatgatatgatctccaatttttacct 325  Q
     |||||| ||||||||| ||| ||||    
T  27445570 tatgataagatctccaactttcacct 27445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 7814119 - 7814067
Alignment:
Q  347 ttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    ||||||| |||||| |||||||||||| ||||||||||||||| | |||||||    
T  7814119 ttttgctgaaattacatttcatatactctgtcttgcttctactcaagcggaag 7814067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 16273417 - 16273519
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatacta 374  Q
    |||||||||||||||||| ||||   |||||||||||||||| ||| | ||||||  |  || || ||| ||||||| | |||||| ||| |||||||||    
T  16273417 gatatttaaattgtgtaacttgt---atgatatgatctccaactttcatctctaaggtcaaactatttcatcttttgttgaaattacattacatatacta 16273513  T
Q  375 tgtctt 380  Q
    ||||||    
T  16273514 tgtctt 16273519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 8671692 - 8671494
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    |||| |||||||||  ||||||  ||||| ||| || ||||||||||||| | || |||| ||  | ||||||| ||||||||||  |||||| ||  |     
T  8671692 attttaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttaggg 8671593  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  ||| |||| || ||| ||| ||||||||  |||||||||||||| | ||||||    
T  8671592 tatgatatgatctccaactttcacctccaaggtagacctacttctccttctgctgaagttacattccatatactccgtcttgcttctactcaagcggaa 8671494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 43240891 - 43241017
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || |||||| |||||||| || |||| ||  | ||| ||| ||||||||||  |||||| ||| |     
T  43240891 atttcaaccacccagcttgaatatgatggcttacatctgcttccatttctccgtcattttgtacgaaggatccaagatatttaaaccgtgtaacttgggg 43240990  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  43240991 tatgatatgatctccaactttcacctc 43241017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 51601830 - 51601704
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||| ||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  51601830 atttccaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 51601731  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  51601730 tatgatatgatctccaactttcacctc 51601704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 394
Target Start/End: Complemental strand, 52421114 - 52421008
Alignment:
Q  288 tgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttcta 387  Q
    ||||| |||||  ||||||||||||| || ||| |||| |||  |||| ||| |||  |||||||| |||||  ||||||||||  |||||||||||| |    
T  52421114 tgtaacttgtggcatgatatgatctctaactttcacctataaggtagagatacttcaccttttgctgaaattccatttcatatatcatgtcttgcttcaa 52421015  T
Q  388 cttaggc 394  Q
    |||||||    
T  52421014 cttaggc 52421008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 10775975 - 10776128
Alignment:
Q  246 ttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgt 345  Q
    ||||||||| |||| |||||| |||||| ||||||||||   ||||| |||||  |||||||||||||||| |||  |||||||| |||||| | ||||     
T  10775975 ttctccatcattttgtattatagacccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctctaaactagaaacatttcgc 10776074  T
Q  346 cttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    ||||||||||||||| ||| |||||| |||||| ||||||| || |||||||||    
T  10776075 cttttgctaaaattacattccatatagtatgtcgtgcttctgctcaggcggaag 10776128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 27450683 - 27450809
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || |||||||||||||||||| ||||  | |||||||||| ||||| |||| ||||||| ||| |     
T  27450683 atttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgcactatggacccaagatatgtaaactgtgtaacttgggg 27450782  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  27450783 tatgatatgatctccaactttcacctc 27450809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 33369464 - 33369356
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatacta 374  Q
    |||||||||||  |||||||||||  ||||||||||||| || |||||| ||||||||| ||||| ||||||||   ||||||||| ||||||||||||     
T  33369464 gatatttaaatcatgtaatttgtggtatgatatgatctctaacttttacatctaaaataaaaatatttcgtctt---ctaaaattacatttcatatactc 33369368  T
Q  375 tgtcttgcttct 386  Q
    | | ||||||||    
T  33369367 tattttgcttct 33369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 41427610 - 41427422
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  || || |||||| ||||||||| || || | || ||||  | || ||||||||| | |||||| ||| |     
T  41427610 atttcaaccacccaacttgaatgtgatgt-ttgtacttgcttatatttctccgtcattctgtactatgagcacaagatatttaagtcgtgtaacttgggg 41427512  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     |||||||||||| ||||||| || | |||  ||||| || ||||| ||||||| |||||| ||||||||||| ||||||||||||||||    
T  41427511 tatgatatgatcttcaattttcacttttaaggtagaactacttcgttttttgctgaaattacatttcatataccatgtcttgcttctact 41427422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 31960324 - 31960522
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  31960324 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaaattgggg 31960423  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  |||  ||| || ||| ||| |||||||| ||||||||||||||| | ||||||    
T  31960424 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccatatactctgtcttgcttctactcaagcggaa 31960522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 400
Target Start/End: Complemental strand, 20917739 - 20917554
Alignment:
Q  215 attgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctcc 314  Q
    |||||||| ||||| ||| || || |||||||||||| | |||||||| |||||| |   |||||||||| ||||||| || ||  |||||||||||| |    
T  20917739 attgaattcgatgacttacatatgtttctatttctccgttgttttatactatggagctcggatatttaaactgtgtaacttatggtatgatatgatcttc 20917640  T
Q  315 aatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaagt 400  Q
    || ||| |||  ||| ||| || || | |   ||| ||| ||| |||||| ||||||||||||||| |||||||||| ||||||||    
T  20917639 aactttcacccttaagataaaactactacacatttcgctgaaactatattccatatactatgtcttacttctacttaagcggaagt 20917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 39708192 - 39708035
Alignment:
Q  237 tgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaa 336  Q
    ||||||||||||||| || |||| || ||| |||||| ||||||||||  |  ||| ||| |  || ||||||||||||| ||| ||||| || |||||     
T  39708192 tgcttctatttctccgtcattttgtactatcgacccaagatatttaaaccgcataacttgaggtataatatgatctccaaatttcacctccaagatagac 39708093  T
Q  337 ataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggc 394  Q
     ||||||  |||||||| || ||||||| ||||||||  |||||||||||||| ||||    
T  39708092 ctaattctccttttgctgaagttatattccatatactccgtcttgcttctactcaggc 39708035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 375
Target Start/End: Original strand, 47265748 - 47265889
Alignment:
Q  234 atttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaata 333  Q
    |||||||||||||||||| || ||||||| |||||| ||| |||||||||| | ||||| ||| |  ||||||||| |||||| ||| ||||| ||  ||    
T  47265748 atttgcttctatttctccgtcattttatactatggatccaagatatttaaactatgtaacttggggtatgatatgacctccaactttcacctccaaggta 47265847  T
Q  334 gaaataattcgtcttttgctaaaattatatttcatatactat 375  Q
    ||  || |||  |||||||| || ||| ||||||||||||||    
T  47265848 gacctacttctccttttgctgaagttacatttcatatactat 47265889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 436001 - 435875
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||| ||  ||||||  ||||| ||| || ||||||||||||||| || |||||||  | ||||||| ||||||||||  |||||| ||| |     
T  436001 atttcaaccactcagcttgaatacgatgacttacatctgcttctatttctccgtcattttatacgaaggacccaagatatttaaaccgtgtaacttgggg 435902  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  435901 tatgatatgatctccaactttcacctc 435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 3273194 - 3273096
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtg 298  Q
    |||||||||| |||  ||||||| ||||  ||||||||||||||||||||   ||||||| || |||||||| | ||| |||||||||||||| |||||    
T  3273194 atttcaaccatccaacttgaattcgatggtttatatttgcttctatttctttgtcgttttgtactatggacctaagatgtttaaattgtgtaacttgtg 3273096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 25867261 - 25867163
Alignment:
Q  302 tgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaagt 400  Q
    |||||||||||  || ||| ||||||||| ||| ||   |||| ||||| ||||||||| |||||||||  |||||||||||||| |||||||||||||    
T  25867261 tgatatgatcttgaactttcacctctaaactagtaacgcttcgccttttcctaaaattacatttcatatgttatgtcttgcttctgcttaggcggaagt 25867163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 33226981 - 33226855
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  33226981 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 33226882  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  33226881 tatgatatgatctccaactttcacctc 33226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 48623037 - 48623163
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||| |||||||||| |     
T  48623037 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaatcgtgtaatttgggg 48623136  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||| ||||||| ||| |||||    
T  48623137 tatgatatgctctccaactttcacctc 48623163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 313
Target Start/End: Complemental strand, 1629203 - 1629090
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||| ||  ||||||  ||||| ||| || |||||||||||||||||||||||||| |||| |  || |||||||||| | ||||| |||||     
T  1629203 atttcaaccactcaagttgaatacgatgatttacatctgcttctatttctccatcgttttatactatgaattcaagatatttaaactatgtaacttgtgg 1629104  T
Q  300 aatgatatgatctc 313  Q
     | |||||||||||    
T  1629103 cacgatatgatctc 1629090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 39754920 - 39755011
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaa 330  Q
    |||||||||||   ||||||| || ||| ||||||||||||||||| ||||| | |||||  |||||||||||| ||| ||| |||||||||    
T  39754920 cttctatttctttgtcgttttgtactatagacccatgatatttaaagtgtgtgacttgtggtatgatatgatcttcaactttcacctctaaa 39755011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 326
Target Start/End: Complemental strand, 56375063 - 56374936
Alignment:
Q  199 aatttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtg 298  Q
    |||||||||||||||  ||||||  ||||  |||||| ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |    
T  56375063 aatttcaaccacccagcttgaatacgatggcttatatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttggg 56374964  T
Q  299 aaatgatatgatctccaatttttacctc 326  Q
      |||||||| ||||||| ||| |||||    
T  56374963 gtatgatatgctctccaactttcacctc 56374936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 1777525 - 1777651
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| |||||||||||||||||  || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  1777525 atttcaaccacccagcttgaatacgatgacttacatttgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaacgtgtaacttgggg 1777624  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||| ||||| ||| |||||    
T  1777625 tatgatatgatttccaactttcacctc 1777651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 23906811 - 23906937
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  23906811 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 23906910  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  23906911 tatgatatgatctccaactttcacctc 23906937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 389
Target Start/End: Original strand, 17666572 - 17666732
Alignment:
Q  224 gatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttac 323  Q
    ||||| ||| |||||||| ||||||| |  | |||| || | || ||||| |||||||||| ||||||| ||||   ||||||||||||| ||  || ||    
T  17666572 gatgatttacatttgcttttatttcttcgacattttgtactttgaacccaagatatttaaactgtgtaacttgt---atgatatgatctctaacgttcac 17666668  T
Q  324 ctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||| ||||||||| |||| |||||| | |||||  ||| ||||||   |||||||||||||||    
T  17666669 ctctaagatagaaatacttcgccttttgatgaaattgcattacatata--ttgtcttgcttctact 17666732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 25597933 - 25597997
Alignment:
Q  265 atggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaa 329  Q
    ||||||||| ||||||||| |||||| | |||||  ||  ||||||||||||||||| |||||||    
T  25597933 atggacccaagatatttaagttgtgtgacttgtggtatagtatgatctccaatttttgcctctaa 25597997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 55769034 - 55769086
Alignment:
Q  347 ttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    |||||||||||||| |||| ||||||| | | ||| |||||||||||||||||    
T  55769034 ttttgctaaaattacattttatatactctttattgtttctacttaggcggaag 55769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 55833290 - 55833342
Alignment:
Q  347 ttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    |||||||||||||| |||| ||||||| | | ||| |||||||||||||||||    
T  55833290 ttttgctaaaattacattttatatactctttattgtttctacttaggcggaag 55833342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 391
Target Start/End: Complemental strand, 48221556 - 48221365
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    |||||||||| |||  ||||||| ||||| ||| || |||||||| |||||  || |||| || |||| | ||| |||||||||| ||||||| |||||     
T  48221556 atttcaaccatccagtttgaattcgatgatttacatatgcttctacttctctgtcattttgtactatgaatccaagatatttaaaatgtgtaacttgtgg 48221457  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctactta 391  Q
     |||||||||||| ||| ||| |||||||| |||||| || | |  |||||||| |||||| ||| ||||||||||||||| ||||||||||    
T  48221456 tatgatatgatcttcaactttcacctctaagatagaactactacaccttttgctgaaattacattacatatactatgtcttacttctactta 48221365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 200 - 391
Target Start/End: Complemental strand, 25191151 - 25190960
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| ||||||||||||||||||||| |||| || ||| |||||| ||||||||||  |||||| ||| |     
T  25191151 atttcaaccacccagcttgaatacgatgatttacatttgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtgtaacttgggc 25191052  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctactta 391  Q
     |||||||||||||||| ||| ||||| ||  ||||   | |||  |||||||| || ||| ||| ||||||||  ||||||||||||||||    
T  25191051 tatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactta 25190960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 400
Target Start/End: Complemental strand, 44395163 - 44395002
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaat 338  Q
    ||||||||||||  | ||||  || |||||||||  ||||||||||| |||||| ||| |   || |||||||||||| ||| | ||||||| |||||||    
T  44395163 cttctatttctctgttgtttagtactatggacccgagatatttaaatcgtgtaacttgcgttgtggtatgatctccaactttcatctctaaactagaaat 44395064  T
Q  339 aattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaagt 400  Q
      || | ||||||||||| ||  ||| |||||||| | |||||||||||| |||||||||||    
T  44395063 gctttgccttttgctaaagttgcattccatatactctatcttgcttctacataggcggaagt 44395002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 19757776 - 19757645
Alignment:
Q  264 tatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatat 363  Q
    |||||||||| ||||||||||   ||||| ||| |  |||||||||||||||| ||| ||||| ||  ||| | || || | ||||||||||| ||| ||    
T  19757776 tatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacctccaaggtaggactactttgccttttgctaaagttacat 19757677  T
Q  364 ttcatatactatgtcttgcttctacttaggcg 395  Q
    | |||||||| ||||||||||||||| |||||    
T  19757676 tccatatactctgtcttgcttctactaaggcg 19757645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 43111606 - 43111715
Alignment:
Q  277 tatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatg 376  Q
    |||||||||||||||| || |   |||||||||||||||| | | ||||||||  || || || ||| ||||||||| |||||| ||| |||||||||||    
T  43111606 tatttaaattgtgtaacttat---atgatatgatctccaactgtcacctctaaggtacaactacttcttcttttgctgaaattacattacatatactatg 43111702  T
Q  377 tcttgcttctact 389  Q
    |||| ||||||||    
T  43111703 tcttacttctact 43111715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 27917320 - 27917219
Alignment:
Q  224 gatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttac 323  Q
    ||||| |||||| ||||| ||||||||| || |||| || ||||||| || ||||||||||  |||||| ||| || |||||||||||||||| ||| ||    
T  27917320 gatgatttatatatgcttatatttctccgtcattttgtactatggactcaagatatttaaaccgtgtaacttgggatatgatatgatctccaactttcac 27917221  T
Q  324 ct 325  Q
    ||    
T  27917220 ct 27917219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 1448224 - 1448312
Alignment:
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||||||||||||| ||||||||||||  |||||||  |||  || ||| ||||||| ||||||||||| | |||||| ||||||||    
T  1448224 atgatatgatctccaacttttacctctaagctagaaatgtttcacctcttgttaaaattttatttcatatattttgtctttcttctact 1448312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 32490274 - 32490414
Alignment:
Q  240 ttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaata 339  Q
    |||||||| | | |||| ||||| ||| |||||| || ||||||||||||||| |||||  |||||||||||| ||| ||| | || |||  |||||| |    
T  32490274 ttctattttttcgtcgtcttataatatagacccaagaaatttaaattgtgtaacttgtggtatgatatgatcttcaactttcatctataagttagaaaca 32490373  T
Q  340 attcgtcttttgctaaaattatatttcatatactatgtctt 380  Q
     |||  ||||||||||| ||  |||||||||||| ||||||    
T  32490374 cttcaccttttgctaaacttgcatttcatatactctgtctt 32490414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 38849866 - 38849740
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||   |||  ||| || ||||||||||||||| || |||| || | |||||||| ||||||||||  |||||| ||| |     
T  38849866 atttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtactgtggacccaagatatttaaaccgtgtaaattgagg 38849767  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  38849766 tatgatatgatctccaactttcacctc 38849740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 47542221 - 47542347
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  47542221 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 47542320  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||| ||||||||||| ||| |||||    
T  47542321 tatgaaatgatctccaactttcacctc 47542347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 51448219 - 51448417
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  |||   ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  51448219 atttcaaccacccagcttgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 51448318  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  |||  ||| || ||| ||||||||||||  |||||||||||||| | ||||||    
T  51448319 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacatttcatatactccgtcttgcttctactcaagcggaa 51448417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 398
Target Start/End: Original strand, 30724411 - 30724508
Alignment:
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
    ||||||||||||||||  || |||| ||||  ||||| | || | |||||||||| | || |||||||||||| ||| |||||||| |||||||||||    
T  30724411 atgatatgatctccaacgttcacctataaacgagaaacactttgccttttgctaataatacatttcatatactttgttttgcttcttcttaggcggaa 30724508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 1470708 - 1470796
Alignment:
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||||||||||||| ||| ||||||||   | |||| ||||  || ||||||||||| ||||||||||||| ||||||  |||||||    
T  1470708 atgatatgatctccaactttcacctctaagcaataaatgattcacctcttgctaaaattttatttcatatactctgtctttattctact 1470796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 400
Target Start/End: Complemental strand, 15750973 - 15750810
Alignment:
Q  237 tgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaa 336  Q
    |||||| || ||||| |||||||  |||||| |||||  || |||||||  ||||||||| ||  | ||||||||||||| ||| |  | ||| ||| ||    
T  15750973 tgcttcgatgtctccttcgttttgcattatgaacccaaaatgtttaaatcatgtaatttgagatgtcatatgatctccaactttcaaatgtaagataaaa 15750874  T
Q  337 ataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaagt 400  Q
     || || | |||||||| |||||| ||| |||||||| | |||| ||||||||||||| |||||    
T  15750873 ctactttgccttttgctgaaattacattccatatactttatcttacttctacttaggcagaagt 15750810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 19757610 - 19757559
Alignment:
Q  346 cttttgctaaaattatatttcatatactatgtcttgcttctacttaggcgga 397  Q
    ||||||||||| ||| ||| |||||||| ||||||||||||||| |||||||    
T  19757610 cttttgctaaagttacattccatatactctgtcttgcttctactaaggcgga 19757559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 26490066 - 26489975
Alignment:
Q  223 tgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctcc 314  Q
    |||||| ||| || ||||||||||||||| || |||||||| ||||| ||| |||||||||||  ||||| |||    ||||||||||||||    
T  26490066 tgatgatttacatctgcttctatttctccgtcattttatatcatggaaccaagatatttaaatcatgtaacttggagtatgatatgatctcc 26489975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 26592022 - 26592147
Alignment:
Q  276 atatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactat 375  Q
    ||||||||| ||| |||  ||||  |||||||| | ||||| ||| |||||||| ||||||||| |  ||||||||||||||||  ||| ||| |  |||    
T  26592022 atatttaaaatgtataacatgtggtatgatatgttatccaactttcacctctaagatagaaatattctgtcttttgctaaaattgcattccatttgttat 26592121  T
Q  376 gtcttgcttctacttaggcggaagtt 401  Q
     ||||| ||||||| | |||||||||    
T  26592122 atcttgtttctactcatgcggaagtt 26592147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 3394482 - 3394285
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || ||||||||||||||| || |||| || |||||||||| ||||||||||  |||||| ||| |     
T  3394482 atttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagatatttaaaccgtgtaacttgggg 3394383  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||   | |||  ||||||||  ||||| ||| |||||||| ||||||||||||||| ||||||||    
T  3394382 tatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct-gaattacattccatatactctgtcttgcttctactcaggcggaa 3394285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 3301621 - 3301423
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||  || ||||||||||||||| || |||  || |||||||||| ||||||||||  |||||| ||| |     
T  3301621 atttcaaccacccagcttgaatacgatgatttgcatctgcttctatttctccttcatttggtactatggacccaagatatttaaaccgtgtaacttgggg 3301522  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||   | |||  |||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||    
T  3301521 tatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaa 3301423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 20318763 - 20318565
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  20318763 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 20318664  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||| || |||  |||  ||| || ||| ||| ||||||||  |||||||||||||| | ||||||    
T  20318663 tatgatatgatctccaactttcacctccaaggtagaactacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaagcggaa 20318565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 381
Target Start/End: Complemental strand, 25937780 - 25937662
Alignment:
Q  264 tatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacc-tctaaaatagaaataattcgtcttttgctaaaattata 362  Q
    |||||||||| ||||||||| |||||||||||| | ||||||||||||||||| ||| ||| | |||  |||||||| |||  |||||||| ||||||      
T  25937780 tatggacccaagatatttaatttgtgtaatttggggaatgatatgatctccaactttcaccttttaaggtagaaatacttctccttttgctgaaattact 25937681  T
Q  363 tttcatatactatgtcttg 381  Q
     |||||||||| |||||||    
T  25937680 cttcatatactttgtcttg 25937662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 388
Target Start/End: Original strand, 6368478 - 6368623
Alignment:
Q  243 tatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataatt 342  Q
    ||||||||| ||||||| || ||| ||  || |||||||||||||||||| |||||  ||| |||||||||||  ||| ||||||| | |||||||  ||    
T  6368478 tatttctccgtcgttttgtactatagatacaagatatttaaattgtgtaacttgtggtatgttatgatctccatctttcacctctacattagaaatgttt 6368577  T
Q  343 cgtcttttgctaaaattatatttcatatactatgtcttgcttctac 388  Q
    |  || |||||||||||| | | |||||||  ||||||||||||||    
T  6368578 cacctcttgctaaaattacaatccatataccttgtcttgcttctac 6368623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 389
Target Start/End: Original strand, 43558340 - 43558513
Alignment:
Q  216 ttgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctcca 315  Q
    ||||||| ||||| ||| || ||||||||||||||  | ||||| ||  ||||||| | ||||||||||| |||||| |||||  ||| |||||||||||    
T  43558340 ttgaattcgatgatttacatctgcttctatttctctgtggttttgtacaatggacctaagatatttaaatcgtgtaacttgtggtatgctatgatctcca 43558439  T
Q  316 atttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    | ||| |||||| |  |||||| | || | |||||||||||  || ||| |||||||| | |||||||| ||||    
T  43558440 actttcacctctgagctagaaacactttgccttttgctaaatctacattccatatactttatcttgcttgtact 43558513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 12492897 - 12493023
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  12492897 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 12492996  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| |||||||||    
T  12492997 tatgatatgatctccaacttttacctc 12493023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 35685491 - 35685437
Alignment:
Q  332 tagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttct 386  Q
    |||||||| | |||||||||||||||||| ||| |||||||| ||||||||||||    
T  35685491 tagaaatactacgtcttttgctaaaattacattacatatactttgtcttgcttct 35685437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 1275037 - 1274848
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  1275037 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 1274938  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     |||||||||||||||| ||| | ||| ||  ||||  || |||  |||| ||| || ||| ||| ||||||||  ||||||||||||||    
T  1274937 tatgatatgatctccaactttcatctccaaggtagacctacttctcctttcgctgaagttacattccatatactccgtcttgcttctact 1274848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 27302496 - 27302573
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    |||||||||||||  |||||| |||||||||| || ||||||||||  ||||| |||| |  ||||||||||||||||    
T  27302496 cttctatttctccgccgttttgtattatggacacaagatatttaaaccgtgtagtttgaggtatgatatgatctccaa 27302573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 16347950 - 16348085
Alignment:
Q  238 gcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaa 337  Q
    |||| ||||||||| || |||| || ||||||| || ||||||||||  |||||| ||| |  |||||||||||||||| ||| ||||| ||  ||||      
T  16347950 gcttttatttctccgtcattttgtactatggacacaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacc 16348049  T
Q  338 taattcgtcttttgctaaaattatatttcatatact 373  Q
    || |||  |||||||| || ||| ||||||||||||    
T  16348050 tacttctccttttgctgaagttacatttcatatact 16348085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 2075984 - 2076110
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||  || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  2075984 atttcaaccacccaacttgaatacgatggcttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 2076083  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  2076084 tatgatatgatctccaactttcacctc 2076110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 10639069 - 10638943
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  10639069 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 10638970  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||| ||||| ||| |||||    
T  10638969 tatgatatgatttccaactttcacctc 10638943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 21363013 - 21363102
Alignment:
Q  244 atttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaata 333  Q
    ||||||| ||||||||||| |||| | ||| |||||| ||| | ||||| ||||| ||||||||||| | || |||| |||| |||||||    
T  21363013 atttctctatcgttttatactatgaatccaagatattcaaactctgtaacttgtgtaatgatatgatgttcatttttcacctataaaata 21363102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 17341747 - 17341827
Alignment:
Q  236 ttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    ||||||||||||||| ||| |||| || ||||||||||  |||||||||   ||||||||  |  ||||||||||||||||    
T  17341747 ttgcttctatttctctatcattttctactatggacccaatatatttaaaccatgtaatttcaggtatgatatgatctccaa 17341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 23979903 - 23979815
Alignment:
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||||||||||||| ||| ||||||||  | ||| || || |||||||| | || ||| ||| ||||||| ||||||||||| ||||    
T  23979903 atgatatgatctccaactttcacctctaaggttgaactactttgtcttttgttgaagttacattacatataccatgtcttgcttttact 23979815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 24178296 - 24178180
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||| ||||||  |||||| ||  |     
T  24178296 atttcaaccacccaacttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatctttaaaccgtgtaacttaggg 24178197  T
Q  300 aatgatatgatctccaa 316  Q
     ||||||||||||||||    
T  24178196 tatgatatgatctccaa 24178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 399
Target Start/End: Original strand, 5258660 - 5258859
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  |||||  || ||  |||||||||||||| || |||| || |||||||||| |||||||||| ||||||| ||| |     
T  5258660 atttcaaccacccagcttgaatacgatgatgtacatcagcttctatttctccgtcattttgtactatggacccaagatatttaaactgtgtaacttgggg 5258759  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
     |||||||||||||||| ||| || || ||  ||||   | |||  |||||||| || ||| ||| |||||||| ||||||||||||||| |||||||||    
T  5258760 tatgatatgatctccaactttcacttccaaggtagacccacttctccttttgctgaagttacattccatatactttgtcttgcttctactcaggcggaag 5258859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 398
Target Start/End: Original strand, 10100371 - 10100565
Alignment:
Q  204 caaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatg 303  Q
    ||||||||||  ||||||  ||||| ||||||  ||||||||||||||  | |||| || |||||||||| ||||||||||  |||||| ||| |  |||    
T  10100371 caaccacccagcttgaatacgatgatttatatcagcttctatttctccgacattttgtactatggacccaagatatttaaaccgtgtaacttggggtatg 10100470  T
Q  304 atatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
    ||||||||||||| ||| ||||| ||  ||||  || |||   |||||||||| ||| ||| ||||||||  |||||||||||||| ||||||||    
T  10100471 atatgatctccaactttcacctccaaggtagacctacttctcattttgctaaagttacattccatatactccgtcttgcttctactcaggcggaa 10100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 385
Target Start/End: Complemental strand, 7079909 - 7079728
Alignment:
Q  197 ttaatttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttg 296  Q
    ||||||||||||| |||  |||||||| |||  ||| |||| |||| |||||||||||||||| || ||| |||| | |||||| ||||| ||||| |||    
T  7079909 ttaatttcaaccatccagcttgaattttatggtttagatttccttcaatttctccatcgttttgtactatagacctaagatattcaaattttgtaacttg 7079810  T
Q  297 tgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttc 385  Q
         || ||||||||||||| || |||| |||| |||||||  |||| |||||  | ||||||||||||||||||| ||| |||||||    
T  7079809 -----tggtatgatctccaatgttcacctgtaaattagaaatgcttcg-cttttaat-aaattatatttcatatactttgttttgcttc 7079728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 9706548 - 9706432
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| |  |||||||||||||||||| |||| ||  ||||||||| ||||||||||  |||||| ||| |     
T  9706548 atttcaaccacccagcttgaatacgatgatttacacctgcttctatttctccatcattttgtaccatggacccaagatatttaaaccgtgtaacttgggg 9706449  T
Q  300 aatgatatgatctccaa 316  Q
     ||||||||||||||||    
T  9706448 tatgatatgatctccaa 9706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 385
Target Start/End: Original strand, 20428146 - 20428331
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||| ||  ||||| ||| || ||||||||||| ||| ||||||| || | ||||||||  |||||||||  | |||| |||||     
T  20428146 atttcaaccacccagcttggatacgatgatttacatctgcttctatttttccgtcgttttgtactgtggacccaatatatttaaaccgcgtaacttgtgg 20428245  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttc 385  Q
     |||||||||||||||| ||| |||||  |  ||||  ||||||  |||||||| || ||| ||| ||||||||  ||||||||||    
T  20428246 tatgatatgatctccaactttcacctcctaggtagacctaattctccttttgctgaagttacattccatatactccgtcttgcttc 20428331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 5631590 - 5631391
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggaccc-atgatatttaaattgtgtaatttgtg 298  Q
    ||||||||||||||  ||||||  ||||| ||| || ||||||||||||||| || |||| || ||||||||| |  |||||||||  |||||| ||| |    
T  5631590 atttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaatatttaaaccgtgtaacttggg 5631491  T
Q  299 aaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
      ||||||||||||| || ||| ||||  ||  ||||   | |||  |||||||| || ||| ||| |||||||| ||||||||||||||| | ||||||    
T  5631490 gtatgatatgatctctaactttcacctgcaaggtagacccacttctccttttgctgaagttacattccatatactttgtcttgcttctactcatgcggaa 5631391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 3632724 - 3632613
Alignment:
Q  264 tatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatat 363  Q
    |||||| ||| ||||||||||| |||||||||  |  |||||||||||||||| ||| ||||| ||  ||||| || ||||| ||||  | |||||||||    
T  3632724 tatggatccaagatatttaaatcgtgtaatttagggtatgatatgatctccaactttcacctcaaaggtagaactacttcgtatttttgttaaattatat 3632625  T
Q  364 ttcatatactat 375  Q
    |  |||||||||    
T  3632624 tcaatatactat 3632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 2680706 - 2680748
Alignment:
Q  346 cttttgctaaaattatatttcatatactatgtcttgcttctac 388  Q
    |||||||| |||||| |||||||||||| ||||||||||||||    
T  2680706 cttttgctgaaattacatttcatatactctgtcttgcttctac 2680748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 8811840 - 8811940
Alignment:
Q  197 ttaatttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttg 296  Q
    ||||||||||||| |||  |||||| | |||  ||| |||| |||| |||| ||||||||||| || ||| |||| | |||||||||||| ||||| |||    
T  8811840 ttaatttcaaccatccagcttgaatcttatggtttagattttcttcaatttatccatcgttttgtactatagacctaagatatttaaattttgtaacttg 8811939  T
Q  297 t 297  Q
    |    
T  8811940 t 8811940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 38606777 - 38606580
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||| | || |||| || |||||||||| ||||||||||  |||||| ||| ||    
T  38606777 atttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagatatttaaaccgtgtaacttggga 38606678  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||   | |||  ||||||| ||||||| ||| ||||||||  |||||||||||||| ||||||||    
T  38606677 tatgatatgatctccaactttcacctc-aaggtagacccacttctccttttgcaaaaattacattccatatactccgtcttgcttctactcaggcggaa 38606580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 398
Target Start/End: Complemental strand, 32630333 - 32630181
Alignment:
Q  246 ttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgt 345  Q
    ||||||||| |||| || |||||||||| ||||||||||  |||||| ||| |  |||||||||||||||| ||| ||||| ||  ||||   | |||      
T  32630333 ttctccatcattttgtaatatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctc 32630234  T
Q  346 cttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
    |||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||    
T  32630233 cttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaa 32630181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 24177721 - 24177821
Alignment:
Q  216 ttgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctcca 315  Q
    |||||| |||||| ||| || ||||||||||||||| || |||| || ||| ||||| |||||||||||  |||||| ||| |  |||||||||||||||    
T  24177721 ttgaatatgatgatttacatctgcttctatttctccgtcattttgtactattgacccgtgatatttaaaccgtgtaaattggggtatgatatgatctcca 24177820  T
Q  316 a 316  Q
    |    
T  24177821 a 24177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 24436514 - 24436594
Alignment:
Q  307 tgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttcta 387  Q
    ||||||| || ||| ||||| | |||| ||||| |||| |||||| |||||||| |||||||||||| |||||||||||||    
T  24436514 tgatctcaaactttcacctcaacaataaaaatatttcgccttttgttaaaattacatttcatatactttgtcttgcttcta 24436594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 389
Target Start/End: Original strand, 43793592 - 43793739
Alignment:
Q  242 ctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataat 341  Q
    |||||||| | || |||| || ||| |||||| |||||||||| ||||||| | |||  ||||||||||||| || ||| ||||||| | | ||||   |    
T  43793592 ctatttcttcgtcattttgtactatagacccaagatatttaaaatgtgtaactagtggtatgatatgatctctaactttcacctctacactcgaaacgct 43793691  T
Q  342 tcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    ||| || |||||||| ||| ||| | |||||| |||||||||||||||    
T  43793692 tcgcctcttgctaaatttacattccgtatactctgtcttgcttctact 43793739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 37616688 - 37616490
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||   |||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||| |||||| ||| |     
T  37616688 atttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaatcgtgtaacttgggg 37616589  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||  ||| ||||| ||  ||||  || |||  ||| |||| || ||| ||| ||||||||  |||||||||||||| | ||||||    
T  37616588 tatgatatgatctccacctttcacctccaaggtagacctacttctccttctgctgaagttacattccatatactccgtcttgcttctactcaagcggaa 37616490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 46356361 - 46356487
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  46356361 atttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaaccgtgtaacttgggg 46356460  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  46356461 tatgatatgatctccaactttcacctc 46356487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 11593732 - 11593606
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || |||||||||||||||||| |||| ||  | ||||||| ||||||||||  || ||| ||| |     
T  11593732 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccatcattttgtacgaaggacccaagatatttaaaccgtctaacttgggg 11593633  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||| ||| ||| |||||    
T  11593632 tatgatatgatcttcaactttcacctc 11593606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 33350316 - 33350514
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  |  |||||  ||||||||||  |||||| ||| |     
T  33350316 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagaccctagatatttaaaccgtgtaacttgggg 33350415  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||  || ||| ||||  ||| || ||| ||| ||||||||  |||||||||||||| | ||||||    
T  33350416 tatgatatgatctccaactttcacctccaaggtagacctacttcttcttccgctgaagttacattccatatacttcgtcttgcttctactcaagcggaa 33350514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 36651766 - 36651640
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  | |||| ||| |     
T  36651766 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgcgtaacttgggg 36651667  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  36651666 tatgatatgatctccaactttcacctc 36651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 18608275 - 18608316
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  18608275 gatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18608316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 18626603 - 18626562
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  18626603 gatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 18637277 - 18637236
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  18637277 gatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 18650712 - 18650671
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  18650712 gatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 49029002 - 49028913
Alignment:
Q  237 tgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctc 326  Q
    |||||||||||||||||| |||| ||  | ||||||| ||||||||||  |||||| ||| |  ||||| |||||||||| ||| |||||    
T  49029002 tgcttctatttctccatcattttgtacaaaggacccaagatatttaaaccgtgtaacttggggtatgatctgatctccaactttcacctc 49028913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 11992616 - 11992814
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || |||||||||||||||||| |||| || ||| |||||| ||||||||||  |||||| ||| |     
T  11992616 atttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtgtaacttgggg 11992715  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||||||  ||||   | |||   |||| || || ||| ||| ||||||||  |||||||||||||| ||||||||    
T  11992716 tatgatatgatctccaactttcacctctaaggtagacccacttctctttttactgaagttacattccatatacttcgtcttgcttctactcaggcggaa 11992814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 45368134 - 45368259
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||| | ||| || |||||||||||||||||| |||| ||||||||||||| ||||||||||  |||||||||| |     
T  45368134 atttcaaccacccagcttgaatacgataatttacatctgcttctatttctccatcattttgtattatggacccaagatatttaaaccgtgtaatttg-gg 45368232  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  45368233 tatgatatgatctccaactttcacctc 45368259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 24584116 - 24584314
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||| ||||||||  |||||| |||||  ||| || ||| | |||||||||||| |||| || |||||||||| ||||||||||  |||||| ||| |     
T  24584116 atttccaccacccagcttgaatatgatggcttaaatctgcctatatttctccatcattttgtactatggacccaagatatttaaaccgtgtaacttgcgg 24584215  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
      ||||||||||||||| ||| ||||| ||  |||| |||||||  |||||||| || ||| ||| ||||||||  |||||| ||||||| | ||||||    
T  24584216 tctgatatgatctccaactttcacctccaaggtagacataattctccttttgctgaagttacattccatatactccgtcttgtttctactcaagcggaa 24584314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 38453130 - 38453256
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||| || |||| ||| | ||||||| ||||||||||| |||||| ||| |     
T  38453130 atttcaaccacccagcttgaatatgatggcttacatatgcttctatttctccgtcattttgtatgaaggacccaagatatttaaatcgtgtaacttgggg 38453229  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  38453230 tatgatatgatctccaactttcacctc 38453256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 201 - 398
Target Start/End: Original strand, 41763560 - 41763757
Alignment:
Q  201 tttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaa 300  Q
    |||||||||||||  ||||||  ||||| ||| || |||||||||||||||  | |||| || |||||||||| ||||||||||| ||| || ||| |      
T  41763560 tttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgacattttgtactatggacccaagatatttaaatcgtgcaacttggggt 41763659  T
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
    ||||||| |||||||| ||| ||||| ||  ||||   | |||  |||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||    
T  41763660 atgatataatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaa 41763757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 7789074 - 7789238
Alignment:
Q  225 atgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacc 324  Q
    |||| |||||| ||||| ||||||||  |  |||| ||||||| |||||||||||||||| || |||| || ||  || |||||||||| ||  || ||     
T  7789074 atgatttatatatgcttatatttctctgttattttgtattatgaacccatgatatttaaaatgcgtaacttatggtatcatatgatctcaaaccttcaca 7789173  T
Q  325 tctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||| || ||||| ||| |||||| || |||||| |||||||||||| |||||||||| ||||    
T  7789174 tctaaagtataaatacttcatcttttactgaaattacatttcatatactttgtcttgcttttact 7789238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 399
Target Start/End: Complemental strand, 37281878 - 37281680
Alignment:
Q  203 tcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaat 302  Q
    |||||||||||  ||||||  ||||| ||| || | ||||||||||||| || ||||||| |||||| | | |||||||||| ||||||| ||| |  ||    
T  37281878 tcaaccacccaacttgaataggatgatttacatctacttctatttctccttcattttatactatggagctaagatatttaaaatgtgtaacttggggtat 37281779  T
Q  303 gatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaa--attatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    || |||||||| || ||| ||||| ||  ||||| || || |||||||| | ||  | || |||||||||||| ||||||||||||||| | |||||||    
T  37281778 gacatgatctcaaactttcacctccaaggtagaactactttgtcttttgttgaagtactacatttcatatactttgtcttgcttctactcaagcggaag 37281680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 2610300 - 2610102
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||  ||| || ||||||||||||||  || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  2610300 atttcaaccacccagcttgaatatgatggtttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 2610201  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaa 398  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  ||| |||| || ||| ||||||||||||  |||||||||||||| | ||||||    
T  2610200 tatgatatgatctccaactttcacctccaaggtagacctacttctccttctgctgaagttacatttcatatactccgtcttgcttctactcaagcggaa 2610102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 12904664 - 12904584
Alignment:
Q  276 atatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaa 356  Q
    |||||||||  |||||| |||||| ||||||||||||||||||| |||||||||| ||||||   |||| |||||||||||    
T  12904664 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 12904584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 4807364 - 4807238
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||| ||||||  ||||  ||| || ||||||||||||||| || |||| ||  |  |||||| |||||||||| ||||||| ||| |     
T  4807364 atttcaaccacccatcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagacccaagatatttaaactgtgtaacttgggg 4807265  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  4807264 tatgatatgatctccaactttcacctc 4807238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 14769940 - 14769884
Alignment:
Q  331 atagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttcta 387  Q
    |||||||||||||| |||| |||||||||| ||| |||||||| |||||||||||||    
T  14769940 atagaaataattcgcctttagctaaaattacattccatatactctgtcttgcttcta 14769884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 8180552 - 8180363
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||||||  | |||||||  |||||||||  |||||| |||       
T  8180552 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttataagaaggacccaaaatatttaaaccgtgtaacttggag 8180453  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  |||   || |||||| ||| |||||||| |||||||||||||||    
T  8180452 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccactgaaattacattccatatactctgtcttgcttctact 8180363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 452132 - 452248
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  452132 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 452231  T
Q  300 aatgatatgatctccaa 316  Q
     ||||||||||||||||    
T  452232 tatgatatgatctccaa 452248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 23866351 - 23866267
Alignment:
Q  276 atatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaatta 360  Q
    |||||||||||||||||||||||  ||||||||||||| || ||| || |||||  ||||| || || | |||||| ||||||||    
T  23866351 atatttaaattgtgtaatttgtggtatgatatgatctctaactttcacatctaagttagaactactttgccttttgttaaaatta 23866267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 13149085 - 13148959
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    |||||||||| |||  ||||||  ||||| || ||| | ||||||||||||| || |||| || ||||||||   ||||||||||  |||||| ||| |     
T  13149085 atttcaaccatccaacttgaatacgatgatttgtatctacttctatttctccgtcattttgtactatggacctgagatatttaaaccgtgtaacttgggg 13148986  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  13148985 tatgatatgatctccaactttcacctc 13148959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 13592959 - 13593047
Alignment:
Q  301 atgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    |||||||||||| ||| ||| ||||||||  | ||| || ||||||||||| | || ||| ||| || |||| ||||||||||||||||    
T  13592959 atgatatgatcttcaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacacataccatgtcttgcttctact 13593047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 9390 - 9269
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaat 338  Q
    |||| |||||| |||||||||||| |||  ||| | ||||||||||| |||||| |  | | |||||||||||||||| ||||||||||||| ||||||     
T  9390 cttccatttcttcatcgttttataatataaacctaagatatttaaatcgtgtaactaataatatgatatgatctccaacttttacctctaaactagaaac 9291  T
Q  339 aattcgtcttttgctaaaatta 360  Q
    |||||  |||||||||||||||    
T  9290 aattcaccttttgctaaaatta 9269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 389
Target Start/End: Complemental strand, 38667286 - 38667142
Alignment:
Q  243 tatttctccatcgttttatattatggacccatgatatttaaat-tgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataat 341  Q
    |||||||| |||||||| || |||| ||||| ||||||||||  | ||||| ||||   |||||||||||||||| ||| |||||||  |||||| || |    
T  38667286 tatttctctatcgttttgtactatgaacccaagatatttaaaactttgtaacttgt---atgatatgatctccaagtttcacctctaggatagaactact 38667190  T
Q  342 tcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
    ||| |||||||||||| || ||| ||||||| ||||||||||||||||    
T  38667189 tcgccttttgctaaaactacattacatataccatgtcttgcttctact 38667142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 399
Target Start/End: Original strand, 41444849 - 41445013
Alignment:
Q  236 ttgcttctatttctccatcgttttatattatgga-cccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatag 334  Q
    |||||||||||||| |||| |||| ||| || || |||| ||||||||||    |||| |||||  |||||||||||||||  ||| ||||||||  |||    
T  41444849 ttgcttctatttctacatcattttgtatcattgaacccaagatatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctctaagttag 41444948  T
Q  335 aaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaag 399  Q
    ||||  |||| ||||||||||||||| ||| |||||||| | |||||||| |||| | |||||||    
T  41444949 aaatgcttcgccttttgctaaaattacattccatatactttatcttgcttttactcatgcggaag 41445013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 36544924 - 36544735
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || ||||||||||||||| || |||| ||  |  | |||||||||||||||   ||||| ||| |     
T  36544924 atttcaaccacccaacttgaatacgatgacttacatctgcttctatttctccgtcattttgtacgaaagccccatgatatttaaaccttgtaacttgggg 36544825  T
Q  300 aatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     |||||||||||||||| ||| ||||| ||  ||||  || |||  |||  |||||| ||| ||| |||||||| |||||||||||||||    
T  36544824 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctaaagttacattccatatactctgtcttgcttctact 36544735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 4033004 - 4033120
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  |||||| |||||| ||| || ||||| |||||||||||| || | || |||| ||||| |||| |||||  |||||| ||| |     
T  4033004 atttcaaccacccaacttgaatatgatgatttacatatgcttttatttctccatcattgtgtactatgaacccaagatacttaaaccgtgtaacttgggg 4033103  T
Q  300 aatgatatgatctccaa 316  Q
     ||||||||||||||||    
T  4033104 tatgatatgatctccaa 4033120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 25985273 - 25985128
Alignment:
Q  239 cttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaat 338  Q
    |||||||||||||||  |||| || ||| || |||  |||||||||  |||||| |||||  |||||||||||  ||| ||| ||||||||  |||||||    
T  25985273 cttctatttctccatatttttgtactatagatccaatatatttaaaccgtgtaacttgtggtatgatatgatc--caactttcacctctaagctagaaat 25985176  T
Q  339 aattcgtcttttgctaaaattatatttcatatactatgtcttgcttct 386  Q
      |||| || |||||||| ||| ||| |||||||| ||||||||||||    
T  25985175 gcttcgcctcttgctaaacttacattccatatactctgtcttgcttct 25985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 389
Target Start/End: Original strand, 33830767 - 33830929
Alignment:
Q  224 gatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttac 323  Q
    ||||| ||| || ||||| ||||||| | || |||| ||  |||||||||  ||||||||| ||||||| || |   |||||| ||| ||||| ||| |     
T  33830767 gatgatttacatatgcttttatttcttcgtcattttgtacaatggacccaaaatatttaaactgtgtaacttat---atgataagatatccaactttcat 33830863  T
Q  324 ctctaaaatagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttctact 389  Q
     |||||  ||||| || |||||| ||||||||||||| ||| |||||||||||| |||||||||||    
T  33830864 gtctaaggtagaactacttcgtcgtttgctaaaattacattacatatactatgttttgcttctact 33830929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 42854514 - 42854629
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || |||||||||||||| | | |||| ||  ||||||||| ||||||||||  |||||| ||| |     
T  42854514 atttcaaccacccagcttgaatacgatgatttacatctgcttctatttctcaaacattttgtacgatggacccaagatatttaaaccgtgtaacttgggg 42854613  T
Q  300 aatgatatgatctcca 315  Q
     |||||||||||||||    
T  42854614 tatgatatgatctcca 42854629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 36565751 - 36565877
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||  ||| || ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  36565751 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaaccgtgtaacttgggg 36565850  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  36565851 tatgatatgatctccaactttcacctc 36565877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 18124932 - 18124878
Alignment:
Q  216 ttgaatttgatgaattatatttgcttctatttctccatcgttttatattatggac 270  Q
    ||||||| ||||| ||| || |||||||||||||||||| |||| ||||||||||    
T  18124932 ttgaattcgatgagttacatctgcttctatttctccatcattttgtattatggac 18124878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 18849700 - 18849754
Alignment:
Q  275 gatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaa 329  Q
    ||||||||||  |||||| ||| |  |||||||||||||||||||||||||||||    
T  18849700 gatatttaaaccgtgtaacttggggtatgatatgatctccaatttttacctctaa 18849754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 28300687 - 28300803
Alignment:
Q  269 acccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctctaaaatagaaataattcgtcttttgctaaaattatatttcat 368  Q
    ||||| |||||||||| ||||||| ||||   |||||||||||||||  ||| ||||||||  | ||| || ||||||||||| | |||| | |||  ||    
T  28300687 acccaagatatttaaactgtgtaacttgt---atgatatgatctccagctttcacctctaaggtcgaactacttcgtcttttgatgaaatcacattaaat 28300783  T
Q  369 atactatgtcttgcttctact 389  Q
    |||||||||| ||||||||||    
T  28300784 atactatgtc-tgcttctact 28300803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 12492389 - 12492478
Alignment:
Q  237 tgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaatttttacctc 326  Q
    ||||||||||||||| || |||| ||  | ||||||| ||||||||||  |||||| ||| |  |||||||||||||||| ||| |||||    
T  12492389 tgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 12492478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 13984258 - 13984202
Alignment:
Q  344 gtcttttgctaaaattatatttcatatactatgtcttgcttctacttaggcggaagt 400  Q
    |||||||||| || ||| ||| |||||||| ||||||||||||||| | ||||||||    
T  13984258 gtcttttgctgaagttacattccatatactctgtcttgcttctactcatgcggaagt 13984202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 82489 - 82377
Alignment:
Q  204 caaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatg 303  Q
    ||||||||||  ||||||  ||||| ||| || ||||||||||||||| || |||| || |||||||||| ||||||||||  |||||| |||||  |||    
T  82489 caaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttttactatggacccaagatatttaaaccgtgtaacttgtggtatg 82390  T
Q  304 atatgatctccaa 316  Q
    |||| ||||||||    
T  82389 atataatctccaa 82377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 2780 - 2906
Alignment:
Q  200 atttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtga 299  Q
    ||||||||||||||  ||||||  ||||| ||| || ||||||||||||| | || |||| ||  | ||||||| ||||||||||  |||||| ||| |     
T  2780 atttcaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 2879  T
Q  300 aatgatatgatctccaatttttacctc 326  Q
     |||||||||||||||| ||| |||||    
T  2880 tatgatatgatctccaactttcacctc 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 24863 - 24918
Alignment:
Q  332 tagaaataattcgtcttttgctaaaattatatttcatatactatgtcttgcttcta 387  Q
    ||||| || |||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  24863 tagaactacttcgtcttttactaaagttacatttcatatactctgtcttgcttcta 24918  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 12145 - 12224
Alignment:
Q  237 tgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttgtgaaatgatatgatctccaa 316  Q
    ||||||||||||||| || |||| || |||||||||| ||||||||||   ||||| ||| |  ||||||||||||||||    
T  12145 tgcttctatttctccgtcattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaa 12224  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 4286 - 4386
Alignment:
Q  197 ttaatttcaaccacccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatatttaaattgtgtaatttg 296  Q
    ||||||||||||| |||  |||||| | |||  ||| |||| |||| |||| ||||||||||| || ||| |||| | |||||||||||| ||||| |||    
T  4286 ttaatttcaaccatccagcttgaatcttatggtttagattttcttcaatttatccatcgttttgtactatagacctaagatatttaaattttgtaacttg 4385  T
Q  297 t 297  Q
    |    
T  4386 t 4386  T

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