View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13752_low_5 (Length: 491)
Name: NF13752_low_5
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13752_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 246 - 465
Target Start/End: Original strand, 41955086 - 41955314
Alignment:
| Q |
246 |
gccatcttcaaattaaatatttgcaaactgagatatttacgtgagtgccgagtggggccatacgttgtttttt--actactaatagannnnnnngagagg |
343 |
Q |
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| T |
41955086 |
gccatcttcaaattaaatatttgcaaactgagatatttacatgagtgccgagtggggccatgcgttgttttttttactactaatagatttttttgagagg |
41955185 |
T |
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| Q |
344 |
tactag-------tagaaaaatgttatcatcacattcttaatcatcataatcataatattaataaaatacgaaagttttctctaaactaacatcaaatta |
436 |
Q |
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| T |
41955186 |
tactaaatactaatagaaaaatgttatcatcacattcttaatcatcataatcataatattaataaaatacgaaagttttcactaaactaacatcaaatta |
41955285 |
T |
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| Q |
437 |
gtctaaccgaaaatctcaatctttaacta |
465 |
Q |
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| T |
41955286 |
gtctaaccgaaaatctcaatctttaacta |
41955314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 41954857 - 41955026
Alignment:
| Q |
12 |
gagtgagatgaagcggagagaagagacctggcggctctggaagcagatttgcagaggtgtgaggccatgttctactcgcaagcagtgtagaatagaagaa |
111 |
Q |
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| T |
41954857 |
gagtgaaatgaagcggagagaagagacctggcggctctggaagcagatttgcagaggtgtgaggccatgttctactcgcacgcagtgtagaatagaagaa |
41954956 |
T |
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| Q |
112 |
tctaaggatgtgttgtatgtgaattttgggtggtgacgttaggatctcttctcttgttgtagcttgcttgc |
182 |
Q |
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| T |
41954957 |
tataaggatgtgttgtatgtgaatttt-ggtggtgatgttaggatctcttctcttgttgtagcttgtttgc |
41955026 |
T |
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