View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13752_low_7 (Length: 462)

Name: NF13752_low_7
Description: NF13752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13752_low_7
NF13752_low_7
[»] chr4 (7 HSPs)
chr4 (11-388)||(18343719-18344099)
chr4 (50-180)||(36638870-36639000)
chr4 (396-462)||(18343619-18343685)
chr4 (427-462)||(506506-506541)
chr4 (427-462)||(18042089-18042124)
chr4 (230-264)||(36639056-36639090)
chr4 (426-462)||(18179698-18179734)
[»] scaffold0002 (4 HSPs)
scaffold0002 (11-353)||(163237-163589)
scaffold0002 (396-462)||(163684-163750)
scaffold0002 (425-462)||(190645-190682)
scaffold0002 (353-388)||(163610-163645)
[»] chr1 (2 HSPs)
chr1 (20-326)||(9857643-9857946)
chr1 (426-462)||(31265993-31266029)
[»] chr6 (4 HSPs)
chr6 (396-449)||(31058812-31058865)
chr6 (339-388)||(31058724-31058773)
chr6 (427-462)||(14543003-14543038)
chr6 (426-462)||(4639385-4639421)
[»] scaffold0330 (2 HSPs)
scaffold0330 (308-353)||(13433-13478)
scaffold0330 (353-388)||(13377-13412)
[»] scaffold0625 (1 HSPs)
scaffold0625 (425-462)||(8627-8664)
[»] chr3 (4 HSPs)
chr3 (425-462)||(13226970-13227007)
chr3 (427-462)||(17223721-17223756)
chr3 (415-458)||(54630234-54630277)
chr3 (132-180)||(31878210-31878258)
[»] chr7 (4 HSPs)
chr7 (427-462)||(6930438-6930473)
chr7 (425-462)||(1399882-1399919)
chr7 (425-462)||(18961072-18961108)
chr7 (425-462)||(18993033-18993069)
[»] scaffold0008 (1 HSPs)
scaffold0008 (427-462)||(265182-265217)
[»] chr5 (1 HSPs)
chr5 (427-462)||(19153794-19153829)
[»] chr2 (1 HSPs)
chr2 (428-461)||(17442402-17442435)
[»] scaffold0477 (1 HSPs)
scaffold0477 (426-462)||(8695-8731)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 18344099 - 18343719
Alignment:
Q  11 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344099 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcattagatgggatggcggacggaactaagaattcattattttttgaggagt 18344000  T
Q  111 tgtggaataacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaata 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  18343999 tgtggactaacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggatttttttgaatttagaaatttttgccaata 18343900  T
Q  211 tgataat---nnnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaa 307  Q
    |||||||            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18343899 tgataataaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataagaa 18343800  T
Q  308 tccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343799 tccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 36638870 - 36639000
Alignment:
Q  50 cttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggaataacccaacattacatcttaaatttataatga 149  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36638870 cttactaattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga 36638969  T
Q  150 aagagtaaatattcgcccgcgaaaatgtgga 180  Q
    |||||| ||||||||||||||||||||||||    
T  36638970 aagagtgaatattcgcccgcgaaaatgtgga 36639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 18343685 - 18343619
Alignment:
Q  396 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttc 18343619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 506506 - 506541
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttc 506541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 18042124 - 18042089
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttc 18042089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 36639056 - 36639090
Alignment:
Q  230 aaatatggattcgttagaaccttatatcaaaacaa 264  Q
    |||||||||||||||||||| ||||||||||||||    
T  36639056 aaatatggattcgttagaacattatatcaaaacaa 36639090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 18179734 - 18179698
Alignment:
Q  426 gaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttc 18179698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 163237 - 163589
Alignment:
Q  11 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt 110  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  163237 gaacttgtgaatacttaagattatattaaatttcataatcttactgattcattagatgggatggtggacggaactaagaattcattattttttgaggagt 163336  T
Q  111 tgtggaataacccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtgga-nnnnnnngaatttagaaatttttgcca- 207  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||     
T  163337 tgtggactaatccaacatcacatcttaaatttataatgaaagagtaaaatattcgcccgcgaaaatgtggatttttttttaatttagaaatttttgccaa 163436  T
Q  208 ---atatgataat----nnnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtct 300  Q
       ||||||||||             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  163437 tatatatgataataaaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtct 163536  T
Q  301 ataagaatccatatttggttctatatcaaagcaagatatacaaatttctaata 353  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  163537 ataaaaatccatatttggttttatatccaagcaagatatacaaatttctaata 163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 163684 - 163750
Alignment:
Q  396 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttc 163750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 190645 - 190682
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttc 190682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  353 atgtcaaaaaatcccgcgattgtattctattttaaa 388  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 9857643 - 9857946
Alignment:
Q  20 aatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggaata 119  Q
    ||||||| | |||||||||||||| ||||||||| |||||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||||||  ||    
T  9857643 aatacctcaaattatattaaatttaataatcttattgattcattagattggatggtggacaaaactaagaattcattattttttgaggagttgtgggcta 9857742  T
Q  120 acccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataatn 218  Q
    | |  ||||||||||||||||||||||||||||||| |||||||| |  | |||||||||||       ||||||| ||||||||||||||||||| |      
T  9857743 atctgacattacatcttaaatttataatgaaagagtaaaatattcacatgtgaaaatgtggatttttttgaatttataaatttttgccaatatgatta-a 9857841  T
Q  219 nnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttgg 318  Q
            || |||||||||||  |||||||||  |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| |    
T  9857842 aaaaaaaagacaaatatggattttttagaacct--tatcaaaacaacattatctagttagacat-gatagcaaaaatggtctatacgaatccatatttcg 9857938  T
Q  319 ttctatat 326  Q
    ||||||||    
T  9857939 ttctatat 9857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 31266029 - 31265993
Alignment:
Q  426 gaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttc 31265993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  396 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  339 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 14543003 - 14543038
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttc 14543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 4639385 - 4639421
Alignment:
Q  426 gaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttc 4639421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
Q  308 tccatatttggttctatatcaaagcaagatatacaaatttctaata 353  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13478 tccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  353 atgtcaaaaaatcccgcgattgtattctattttaaa 388  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 8664 - 8627
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttc 8627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 13226970 - 13227007
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttc 13227007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 17223756 - 17223721
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttc 17223721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 54630277 - 54630234
Alignment:
Q  415 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacg 458  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacg 54630234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 31878210 - 31878258
Alignment:
Q  132 atcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtgga 180  Q
    |||||||||||||||| ||||||||| ||||||  ||| ||||||||||    
T  31878210 atcttaaatttataattaaagagtaattattcggtcgcaaaaatgtgga 31878258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 6930438 - 6930473
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttc 6930473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 1399882 - 1399919
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttc 1399919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 18961072 - 18961108
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttc 18961108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 18993033 - 18993069
Alignment:
Q  425 cgaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttc 18993069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 265217 - 265182
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    |||||||||||||||||||||||| |||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttc 265182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 19153829 - 19153794
Alignment:
Q  427 aggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    |||||||||| |||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttc 19153794  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 17442435 - 17442402
Alignment:
Q  428 ggagccgtatgaggtgaaaatctcatgtacggtt 461  Q
    ||||||||| ||||||||||||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggtt 17442402  T

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Target: scaffold0477 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 8731 - 8695
Alignment:
Q  426 gaggagccgtatgaggtgaaaatctcatgtacggttc 462  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttc 8695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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