View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13754_high_1 (Length: 742)
Name: NF13754_high_1
Description: NF13754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13754_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 11 - 714
Target Start/End: Complemental strand, 30484190 - 30483491
Alignment:
| Q |
11 |
catcatcacatttaggactaatttgagtaacactactacaattgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctc |
110 |
Q |
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| T |
30484190 |
catcatcacatttaggactaatttgagtaacactactacaattgttgtttgtttctttagaaaattgaagaagattcatcaaagaattattttggttctc |
30484091 |
T |
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| Q |
111 |
atttaaatgacaatgatgggtggttgtcattgaagatgagaaagaagcaaattggttatacccaattggcatggtttggttggttagggatgggactata |
210 |
Q |
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| T |
30484090 |
atttaaatgacaatgatgggt---tgtcattgaagatgagaatgaagcaaattggttatacccaattggcatggtttggttggttagggatgggactata |
30483994 |
T |
|
| Q |
211 |
gtctcatacatttcttgtggacttaatttggcattattttctgtcttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagt |
310 |
Q |
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| T |
30483993 |
gtctcatacatttcttgtggacttaatttggcattattttctgtcttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagt |
30483894 |
T |
|
| Q |
311 |
ttgaactaattagcaaaaataaatgtgaaaccaaaataactagatttttaaagaagctttaacatcacacttaaaatacgtgagaatcatttcttttcca |
410 |
Q |
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| T |
30483893 |
ttgaactaattaacaaaaataaatgtgaaaccaaaataactagatttttaaagaagctttaacatcacacttaaaatacgtgagaatcatttcttttcca |
30483794 |
T |
|
| Q |
411 |
cttatgaaaatattctattctatccaattcaatcaatgacaacaataaatctcttaattaagatttggaccaaaaaagtcctcacatacacattgttttc |
510 |
Q |
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| T |
30483793 |
cttatg-taatattctattctatccaattcaatcaatgacaacaataaatctcttaattaagatttggaccaaaaaagtcctcacatacacattgttttc |
30483695 |
T |
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| Q |
511 |
ctctatctcaaaaagatgctaaatccaatcactcctccaactttctcaccttattttaaatagctagctcttgaattttgtttctacgttaagtttattn |
610 |
Q |
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| T |
30483694 |
ctctatctcaaaaagatgctaaatccaatcactcttccaactttctcaccttattttaaatagctagctcttgaattttgtttctacgtcaagtttatta |
30483595 |
T |
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| Q |
611 |
nnnnnncttaattagagattcttgtaagaaaacttgaatttattctacattgatgttttttatacttataggaatattagtcaatcatatttaattaatg |
710 |
Q |
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| T |
30483594 |
aaaaaacttaattagagattcttgtaagaaaacttgaatttattctacattgatgttttttatacttataggaatattagtcaatcatatttaattaatg |
30483495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 39015161 - 39015246
Alignment:
| Q |
256 |
ttgcctttatgaaatactctacacaaaacccagtcttcctgtaatcaacaaaagtttgaactaattagcaaaaataaatgtgaaac |
341 |
Q |
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|||| ||| ||||| ||||||||||| |||||||| |||||| |||||||||| ||||| ||||||| |||| ||| |||| |||| |
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| T |
39015161 |
ttgcttttgtgaaagactctacacaatacccagtcctcctgtgatcaacaaaaatttgacctaattaacaaatatatatgtaaaac |
39015246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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