View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13754_high_5 (Length: 224)
Name: NF13754_high_5
Description: NF13754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13754_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4325964 - 4326178
Alignment:
| Q |
1 |
ttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctagtcattttttcccttattgtttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4325964 |
ttttctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctggtcattttttcccttattgtttcaa |
4326063 |
T |
|
| Q |
101 |
tttgttgttagagtactagtttaaaaaatgagtttgtgctccttcctaccctcatttttctttgtaaatgaaatgaaaatagggtgaatcttttgcagtg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4326064 |
tttgttgttag---actagtttaaaaaatgagtttgtgctccttcctaccctcatttttctttgtaaatgaaatgaaaatagggtgaatcttttgcagtg |
4326160 |
T |
|
| Q |
201 |
atttgacttaattctgtg |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4326161 |
atttgacttaattctgtg |
4326178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University