View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13754_low_2 (Length: 487)
Name: NF13754_low_2
Description: NF13754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13754_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 39852019 - 39852457
Alignment:
| Q |
19 |
ccataaacattgttgcttcttggcttggcattatgtttagtttctaaannnnnnnncttcatgttatcagcatatactgaaaacaatttgcgtgacaata |
118 |
Q |
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| T |
39852019 |
ccataaacattgttgcttcttggcttggctttatgtttagtttctaatttttt----ttcatgttatcagcatatactgaaaacaatttgcgtgacaata |
39852114 |
T |
|
| Q |
119 |
cacctaaaacatttgatcaacggtgagttgtttattcattatttgtataa-gtcgaccaattgattcgtatatctttgacagggatgccatcattgcttc |
217 |
Q |
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| T |
39852115 |
ctcctaaaacatttgatcaacggtgagttgtttattcattatttgtaaaaagtcgactaattgattcgtatatctttgacagggatgccatcattgcttc |
39852214 |
T |
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| Q |
218 |
tgctccaagctatgagaagccttacatataaagttccaaatatcctaagt--------aagttgcttagatgagttattttgat---nnnnnnngtaact |
306 |
Q |
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| T |
39852215 |
tgctccaagctatgagaagccttacatataaagttccaaatgtcctaagtgtggactaaagttgcttagatgagttattttgataaaaaaaaaagtaact |
39852314 |
T |
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| Q |
307 |
catgaagacattgtcttgtaccttgaatttgttggtttatgatgagtatcaaacatattcttcagnnnnnnnccgcaataagcaagttactgcccttaaa |
406 |
Q |
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| T |
39852315 |
catgaagacattgtcttgtaccttgaatttgttggtttatgatgagtatcaaacatattcttcagaaaaaaaccgcaataagcaagttactgccattaaa |
39852414 |
T |
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| Q |
407 |
tcgatagcagtaacgcgcttaattattcatttaaattataaac |
449 |
Q |
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| T |
39852415 |
tcgatagcagtaacgtgcttaattattcatttaaattataaac |
39852457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 43187318 - 43187404
Alignment:
| Q |
79 |
atgttatcagcatatactgaaaacaatttgcgtgacaatacacctaaaacatttgatcaacggtgagttgtttattcattatttgta |
165 |
Q |
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| T |
43187318 |
atgttatctgcagatactgaaaacaatttgcgtgacaatactcctgaaacatttgatcaacggtgagttgtttattcattatttgta |
43187404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 43208114 - 43208199
Alignment:
| Q |
78 |
catgttatcagcatatactgaaaacaatttgcgtgacaatacacctaaaacatttgatcaacggtgagttgtttattcattatttgt |
164 |
Q |
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| T |
43208114 |
catgttatctgcagatac-gaaaacaatttgcgcgacaatactcctaaaacatttgatcaacggtgagttgtttattcattatttgt |
43208199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 43189459 - 43189518
Alignment:
| Q |
185 |
gtatatctttgacagggatgccatcattgcttctgctccaagctatgagaagccttacat |
244 |
Q |
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| T |
43189459 |
gtatatccttgacagggatgccatcatcgcttccgttccaagctatgaatagccttacat |
43189518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 43189331 - 43189410
Alignment:
| Q |
79 |
atgttatcagcatatactgaaaacaatttgcgtgacaatacacctaaaacatttgatcaacggtgagttgtttattcatt |
158 |
Q |
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|||||| | ||| |||||||||||||||||| | | ||||| ||| |||||||||| | | |||||| |||||||||||| |
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| T |
43189331 |
atgttaactgcagatactgaaaacaatttgctttaaaatactcctgaaacatttgacccaaggtgagctgtttattcatt |
43189410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 43208240 - 43208314
Alignment:
| Q |
180 |
gattcgtatatctttgacagggatgccatcattgcttctgctccaagctatgagaagccttacatataaagttcca |
255 |
Q |
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| T |
43208240 |
gattggtatatccttgacaaggatgctatcctcgcttctattccaagctatgaggagccttacat-taaagttcca |
43208314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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