View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13754_low_8 (Length: 207)
Name: NF13754_low_8
Description: NF13754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13754_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 27521321 - 27521516
Alignment:
| Q |
11 |
aaggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521321 |
aaggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaaga |
27521420 |
T |
|
| Q |
111 |
atgcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521421 |
atgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 27462112 - 27461919
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27462112 |
ggatcagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27462013 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27462012 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 27482251 - 27482058
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27482251 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27482152 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
206 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27482151 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 18986212 - 18986019
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18986212 |
ggatcagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
18986113 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
18986112 |
gcttcttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 1758260 - 1758067
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1758260 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
1758161 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1758160 |
gcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 29425408 - 29425232
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29425408 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaat |
29425309 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29425308 |
gcttcttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 29568357 - 29568536
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
29568357 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
29568456 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
29568457 |
gcttcttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 29168367 - 29168171
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
29168367 |
ggatcagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaat |
29168268 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
206 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29168267 |
gcttattggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 29569708 - 29569866
Alignment:
| Q |
33 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
132 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
133 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
33 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
132 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
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|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
133 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
192 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 25518596 - 25518400
Alignment:
| Q |
13 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
112 |
Q |
| |
|
||||||| |||||||| || ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25518596 |
ggatcagcgacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
25518497 |
T |
|
| Q |
113 |
gcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
206 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25518496 |
gcttcttggatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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