View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_high_1 (Length: 730)
Name: NF13755_high_1
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_high_1 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 106 - 723
Target Start/End: Complemental strand, 35829123 - 35828506
Alignment:
| Q |
106 |
tacccctttatcttattatatgtcattcttcaggtatctaagttcagagattcaatactatctgaatgtttgtcgatggcagaatcagaaaatgcacgtt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829123 |
tacccctttatcttattatatgtcattcttcaggtatctaagttcagagattcaatactatctgaatgtttgtcgatggcagaatcagaaaatgcacgtt |
35829024 |
T |
|
| Q |
206 |
gttgcaaagattcatctggtgtagtttgacttgaagaacctgcagattcctccttggttaaactatgcaaagcaggcttcaattcagtgtttaagaattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829023 |
gttgcaaagattcatctggtgtagtttgacttgaagaacctgcagattcctccttggttaaactatgcaaagcaggcttcaattcagtgtttaagaattt |
35828924 |
T |
|
| Q |
306 |
atcatactcaaccttatcccctccttttttcttcacctcaaccaccaccaaagaaggtgtcaattcgaagacctccgcagcaatagtcaatcgccctttt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35828923 |
atcatactcaaccttatcccctccttttttcttcacctcaaccaccaccaaagaaggtgtcaattcgaagacctcggcagcaatagtcaatcgccctttt |
35828824 |
T |
|
| Q |
406 |
gccccttctcttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828823 |
gccccttctcttgaaccctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttg |
35828724 |
T |
|
| Q |
506 |
gcactgatgcactagacacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcatt |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828723 |
gcactgatgcactagacacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcatt |
35828624 |
T |
|
| Q |
606 |
caaacttgcaggccttggcaacgaaccacgattcctgatccttctattcacaacctcagaatccgattcatttcctgatactgattccagtacttcatcg |
705 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35828623 |
caaacttgcaggccttggcaatgaaccacgattcctgatccttctattcacaacctcagaatccgattcattttctgatactgattccagtacttcatcg |
35828524 |
T |
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| Q |
706 |
tgatgatcatcgaccttt |
723 |
Q |
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|||||||||||||||||| |
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| T |
35828523 |
tgatgatcatcgaccttt |
35828506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 322 - 626
Target Start/End: Original strand, 4956019 - 4956323
Alignment:
| Q |
322 |
tcccctccttttttcttcacctcaaccaccaccaaagaaggtgtcaattcgaagacctccgcagcaatagtcaatcgcccttttgccccttctcttgaac |
421 |
Q |
| |
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||||| |||||||||||||||||||| || |||||||||||||| | || || | ||| ||||||||||||| | | || || | ||||| |||| || |
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| T |
4956019 |
tccccaccttttttcttcacctcaacaacaaccaaagaaggtgttagctcaaatatctcagcagcaatagtcagtggtcccttcacaccttcccttgtac |
4956118 |
T |
|
| Q |
422 |
cctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttggcactgatgcactaga |
521 |
Q |
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| |||||||||||| ||||||| |||||||||||| | || ||||||| |||| ||| ||||||||||||||||| ||||||| || | |||| || |
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| T |
4956119 |
cttccaagctaaccctgcaatccttcttcctcacagtaaaactaaccaattgagcaatctcctccaattttgatatgatctttgaaaccggtgcagcagt |
4956218 |
T |
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| Q |
522 |
cacaaaccttgcctcatcacccttttcctcaaataaaccagaaagatcaaaaccttgcgaaaacgatataatatcaaaagcattcaaacttgcaggcctt |
621 |
Q |
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||| | ||| ||||| || ||||||||||| |||||||||||||||||||| | || || || ||||| ||||||||||||||||| ||||| || |
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| T |
4956219 |
cacgatcctattttcatctcctttttcctcaaacaaaccagaaagatcaaaaccaggtgagaatgaaataatgtcaaaagcattcaaactagcaggtcta |
4956318 |
T |
|
| Q |
622 |
ggcaa |
626 |
Q |
| |
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||||| |
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| T |
4956319 |
ggcaa |
4956323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 322 - 505
Target Start/End: Original strand, 2011 - 2194
Alignment:
| Q |
322 |
tcccctccttttttcttcacctcaaccaccaccaaagaaggtgtcaattcgaagacctccgcagcaatagtcaatcgcccttttgccccttctcttgaac |
421 |
Q |
| |
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||||| |||||||||||||||||||| || |||||||||||||| | || || | ||| ||||||||||||| | | || || | ||||| |||| || |
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| T |
2011 |
tccccaccttttttcttcacctcaacaacaaccaaagaaggtgttagctcaaatatctcagcagcaatagtcagtggtcccttcacaccttcccttgtac |
2110 |
T |
|
| Q |
422 |
cctccaagctaaccttgcaatctttcttcctcacattgaacctaaccatttgaccaacttcctccaattttgatattatctttg |
505 |
Q |
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| |||||||||||| ||||||| |||||||||||| | || ||||||| |||| ||| ||||||||||||||||| ||||||| |
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| T |
2111 |
cttccaagctaaccctgcaatccttcttcctcacagtaaaactaaccaattgagcaatctcctccaattttgatatgatctttg |
2194 |
T |
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