View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_high_19 (Length: 238)
Name: NF13755_high_19
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 41566146 - 41566330
Alignment:
| Q |
11 |
tgttaattaactaagaacttactatatgttatgtaaattaatatgaatatccataaacaacaagagcaacacgttaatattgaacaaacgaaattgctca |
110 |
Q |
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| T |
41566146 |
tgttaattaactaagatcttactatatgttatgtaaattaatatgaatatccataaacaacaagagcaacacgttaatattgaacaaacgaaattgctca |
41566245 |
T |
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| Q |
111 |
ccttaaagctaacgttgtaagcaatgaactcagaggcaaatacaccaaacaagtagctatcgaatgttcctgtggaatttccatt |
195 |
Q |
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| T |
41566246 |
ccttaaagctaacgttgtaagcaatgaactcagaggcaaatacaccaaacgagtagctatcgaatgttcctgtggaatttccatt |
41566330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 41435642 - 41435538
Alignment:
| Q |
9 |
tgtgttaattaactaagaacttactatatgttatgtaaattaatatgaatatccataaacaacaagagcaacacgttaatattgaacaaacgaaattgct |
108 |
Q |
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| T |
41435642 |
tgtgttaattgactaagatcttactatatgttatgcaaattaatatgaatatccataaataacaagaaaaacacattaatattgaacaaacgaaattgct |
41435543 |
T |
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| Q |
109 |
cacct |
113 |
Q |
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||||| |
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| T |
41435542 |
cacct |
41435538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 41435517 - 41435409
Alignment:
| Q |
110 |
accttaaagctaacgttgtaagcaatgaactcagaggcaaatacacc-aaacaagtagctatcgaatgttcctgtggaatttccattgtcattccattct |
208 |
Q |
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| T |
41435517 |
accttaaaactaatgttgtaagcaatgaacttagaagcaaatacaccaaaaggagtagctatcgtatgttaccgtggaatttgcaatatcattccattct |
41435418 |
T |
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| Q |
209 |
atgactgta |
217 |
Q |
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| T |
41435417 |
atgactgta |
41435409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 41574404 - 41574525
Alignment:
| Q |
100 |
gaaattgctcaccttaaagctaacgttgtaagcaatgaactcagaggcaaatacaccaaacaagtagctatcgaatgt---tcctgtggaatttccattg |
196 |
Q |
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||||||||| ||||||||||||| |||||||||| |||||| || ||||| || ||||| ||||||||| | | || ||| ||||||||| || || |
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| T |
41574404 |
gaaattgcttaccttaaagctaatgttgtaagcagtgaactttgaagcaaaaaccgcaaacgagtagctataggaagtccctccagtggaatttgcagtg |
41574503 |
T |
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| Q |
197 |
tcattccattctatgactgtat |
218 |
Q |
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| T |
41574504 |
tcattccattctatgattgtat |
41574525 |
T |
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