View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13755_high_2 (Length: 715)

Name: NF13755_high_2
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13755_high_2
NF13755_high_2
[»] chr5 (4 HSPs)
chr5 (17-148)||(36680707-36680838)
chr5 (201-304)||(36680891-36680991)
chr5 (416-490)||(36681095-36681169)
chr5 (416-491)||(36681851-36681927)
[»] chr1 (7 HSPs)
chr1 (503-622)||(51165387-51165507)
chr1 (503-582)||(51164874-51164953)
chr1 (17-121)||(29416235-29416339)
chr1 (416-477)||(47445060-47445123)
chr1 (416-493)||(27585986-27586064)
chr1 (416-494)||(36475971-36476052)
chr1 (414-491)||(45575986-45576064)
[»] chr8 (4 HSPs)
chr8 (18-96)||(26931177-26931255)
chr8 (18-101)||(26939823-26939906)
chr8 (18-101)||(26964522-26964605)
chr8 (18-115)||(26927618-26927715)
[»] chr7 (2 HSPs)
chr7 (413-467)||(32390008-32390063)
chr7 (418-467)||(3987239-3987289)
[»] chr2 (2 HSPs)
chr2 (416-493)||(22539114-22539192)
chr2 (503-583)||(19014100-19014180)
[»] chr3 (5 HSPs)
chr3 (503-583)||(7266612-7266692)
chr3 (416-491)||(1577511-1577588)
chr3 (416-491)||(50837517-50837594)
chr3 (413-484)||(50381917-50381990)
chr3 (416-484)||(28539357-28539426)
[»] scaffold0102 (1 HSPs)
scaffold0102 (416-491)||(33144-33223)
[»] chr4 (10 HSPs)
chr4 (413-467)||(11147827-11147883)
chr4 (416-467)||(21224327-21224379)
chr4 (416-467)||(21225880-21225932)
chr4 (416-491)||(620527-620605)
chr4 (416-491)||(621536-621614)
chr4 (416-491)||(49681320-49681397)
chr4 (413-493)||(11148094-11148176)
chr4 (416-477)||(21226524-21226585)
chr4 (414-484)||(31632446-31632517)
chr4 (416-484)||(49682033-49682102)
[»] chr6 (1 HSPs)
chr6 (416-491)||(30710279-30710356)
[»] scaffold0169 (1 HSPs)
scaffold0169 (413-465)||(27400-27453)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 36680707 - 36680838
Alignment:
Q  17 agtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaatgaacaaaaaggagcattag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  36680707 agtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaatttgaagaaaaatgaaccaaaaggagcattag 36680806  T
Q  117 gaagatgaggaattgtgagaggggttgagttc 148  Q
    |||  |||||||||||||||||||||||||||    
T  36680807 gaatgtgaggaattgtgagaggggttgagttc 36680838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 36680891 - 36680991
Alignment:
Q  201 taagcacttactctttcactgtagaatttagcttctgaattctgatgcgcagttgtctaaggggtgtattgaattaaaatttaaaagattttttaatgat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  | || |||||| |||||||  ||||||||| |||||||||| |||||||||||    
T  36680891 taagcacttactctttcactatagaatttagcttctgaattctgagacacacttgtct-aggggtg--ttgaattaagatttaaaagactttttaatgat 36680987  T
Q  301 aaaa 304  Q
    ||||    
T  36680988 aaaa 36680991  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 490
Target Start/End: Complemental strand, 36681169 - 36681095
Alignment:
Q  416 tttaacagccaaaataaatggaggggtaattgactaatgtttgacaatttcacgagggttttgaagttttctaaa 490  Q
    ||||||||||||||  || |  ||||||||||||||| ||||||||||||||   || |||||||||||| ||||    
T  36681169 tttaacagccaaaacgaacgagggggtaattgactaacgtttgacaatttcaaagggtttttgaagttttttaaa 36681095  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 36681851 - 36681927
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggttttgaagttttctaaaa 491  Q
    |||||||| ||||| ||| |||||||  ||||||||||| |||||||||||||| | ||| ||||||||||| |||||    
T  36681851 tttaacagtcaaaacaaacggaggggggtaattgactaacgtttgacaatttcatg-ggggtttgaagttttttaaaa 36681927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 503 - 622
Target Start/End: Complemental strand, 51165507 - 51165387
Alignment:
Q  503 atctgctccatttttatatctgtccagttacccggttctctacacagatgcatgacacatgacaattaaaaactcaatggccgagattaaaagaacta-a 601  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| |    
T  51165507 atctgctccatttttatatctgtccagttacccggttcttttcacagatacatgacacgtggcaattaaaaactcaatggctgagattaaaagaactaca 51165408  T
Q  602 aaaatgattcctgtgaaaccc 622  Q
    |||| ||||  ||||||||||    
T  51165407 aaaacgatttttgtgaaaccc 51165387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 503 - 582
Target Start/End: Original strand, 51164874 - 51164953
Alignment:
Q  503 atctgctccatttttatatctgtccagttacccggttctctacacagatgcatgacacatgacaattaaaaactcaatgg 582  Q
    ||||||||||||| ||||| ||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||    
T  51164874 atctgctccatttctatatatgtccagttacccggttcttttcacagatacatgacacatggcaattaaaaactcaatgg 51164953  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 29416235 - 29416339
Alignment:
Q  17 agtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaatgaacaaaaaggagcattag 116  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||| | |||||  |||| ||||||||  |||| ||| | ||||||||    
T  29416235 agtgagaagatgaggcttcttgttgttgggttcgtcgtggtctgaattttccatttgggttctgcgaattggaagaaaagggaaccaaacgaagcattag 29416334  T
Q  117 gaaga 121  Q
    |||||    
T  29416335 gaaga 29416339  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 47445123 - 47445060
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggtttt 477  Q
    |||||||||||||||||| |||||||  ||||||||||| |||||||||||||| | |||||||    
T  47445123 tttaacagccaaaataaacggaggggggtaattgactaacgtttgacaatttcatgggggtttt 47445060  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 27585986 - 27586064
Alignment:
Q  416 tttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgagggttttgaagttttctaaaagt 493  Q
    ||||||||||| || ||||||||||| ||||||||||| |||| ||||||||| |||  |||||||||||  |||||||    
T  27585986 tttaacagccataacaaatggagggggtaattgactaacgtttaacaatttcaggagttttttgaagtttcttaaaagt 27586064  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 36475971 - 36476052
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgaggg-ttttgaagttttctaaaagtt 494  Q
    |||||||||||||| |||||||||||  ||||||||||| |||| ||||||||| | ||| |||||||||||  ||||||||    
T  36475971 tttaacagccaaaacaaatggaggggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaagtt 36476052  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 45576064 - 45575986
Alignment:
Q  414 ggtttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgagggttttgaagttttctaaaa 491  Q
    ||||||| |||| ||| ||| ||||||| ||||||||||| |||||||||||| | | | ||||||||||||| |||||    
T  45576064 ggtttaatagcccaaacaaacggagggggtaattgactaacgtttgacaattttatgggagttttgaagttttttaaaa 45575986  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 26931177 - 26931255
Alignment:
Q  18 gtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaa 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26931177 gtgagaagatgcggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctaaaaatttgaagaaaaa 26931255  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 26939906 - 26939823
Alignment:
Q  18 gtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaatgaac 101  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26939906 gtgagaagatgtggcttcttcttgtttggttggtcgtgatctgaattttccatttcaattctgaaaatttgaagaaaaatgaac 26939823  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 26964522 - 26964605
Alignment:
Q  18 gtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaatgaac 101  Q
    ||||||||||| | ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26964522 gtgagaagatgcgtcttcttcttgtctggttggtcgatatctgaattttccatttcgattctgaaaatttgaagaaaaatgaac 26964605  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 26927618 - 26927715
Alignment:
Q  18 gtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaattcgaagaaaaatgaacaaaaaggagcatta 115  Q
    |||| ||||||  |||||||||||||||||| || |||||||||||||||||||| |||||||||||   |||||||||||||| ||| | |||||||    
T  26927618 gtgaaaagatgctgcttcttcttgtctggttggtggtgatctgaattttccatttggattctgaaaagatgaagaaaaatgaaccaaacgaagcatta 26927715  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 32390063 - 32390008
Alignment:
Q  413 tggtttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttca 467  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  32390063 tggtttaacaaccaaaataaatggaggggataattgactaacgtttgacaatttca 32390008  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 3987239 - 3987289
Alignment:
Q  418 taacagccaaaataaatggagggg-taattgactaatgtttgacaatttca 467  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||    
T  3987239 taacagccaaaacaaacggagggggtaattgactaacgtttgacaatttca 3987289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 22539114 - 22539192
Alignment:
Q  416 tttaacagccaaaataaatggaggggtaattgactaatgtttgacaatttcacgagg-gttttgaagttttctaaaagt 493  Q
    |||||||||||||| | | |||||||||||||||||| |||||||||||||| | ||  |||||||||||| |||||||    
T  22539114 tttaacagccaaaacatacggaggggtaattgactaacgtttgacaatttcatggggttttttgaagttttttaaaagt 22539192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 583
Target Start/End: Original strand, 19014100 - 19014180
Alignment:
Q  503 atctgctccatttttatatctgtccagttacccggttctctacacagatgcatgacacatgacaattaaaaactcaatggc 583  Q
    ||||||||||||| || ||| |||||||||||||||||| | ||||||| |||||||| || |||||| ||  ||||||||    
T  19014100 atctgctccatttgtaaatcagtccagttacccggttcttttcacagatacatgacacgtggcaattacaagttcaatggc 19014180  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 583
Target Start/End: Original strand, 7266612 - 7266692
Alignment:
Q  503 atctgctccatttttatatctgtccagttacccggttctctacacagatgcatgacacatgacaattaaaaactcaatggc 583  Q
    ||||||||||||| |  |||| |||| |||||||||||||| ||| |||| |||| ||||| ||||||||||||| |||||    
T  7266612 atctgctccatttatgcatctatccatttacccggttctcttcaccgatgaatgatacatggcaattaaaaactccatggc 7266692  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 1577511 - 1577588
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggttttgaagttttctaaaa 491  Q
    |||||||||||||| ||| |||||||  ||||||||||| ||||| |||||||| | || ||||||||||| ||||||    
T  1577511 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggtttttgaagtttcctaaaa 1577588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 50837594 - 50837517
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggttttgaagttttctaaaa 491  Q
    |||||||||||||| ||| |||||||  ||||||||||| ||||| |||||||| | || ||||||| ||||||||||    
T  50837594 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggtttttgaaattttctaaaa 50837517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 50381990 - 50381917
Alignment:
Q  413 tggtttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggttttgaagttt 484  Q
    ||||||||||||||||| |||  ||||||  ||||||||||| ||||||||||||||   ||| ||||||||||    
T  50381990 tggtttaacagccaaaacaaacagaggggggtaattgactaacgtttgacaatttcagaggggatttgaagttt 50381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 28539357 - 28539426
Alignment:
Q  416 tttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgagggttttgaagttt 484  Q
    |||||||||||||| ||| |||| || ||||||||||| |||| ||||||| | | ||||||||||||||    
T  28539357 tttaacagccaaaacaaacggagaggataattgactaacgtttaacaattttatgggggttttgaagttt 28539426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 33144 - 33223
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgagggtttt--gaagttttctaaaa 491  Q
    |||||||||||||| ||| |||||||  ||||||||||| |||||||||||||| | |||||||  ||||||| ||||||    
T  33144 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgacaatttcaggggggtttttggaagtttcctaaaa 33223  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 11147883 - 11147827
Alignment:
Q  413 tggtttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttca 467  Q
    ||||||||||||||||| ||| |||||||  ||||||||||| ||||||||||||||    
T  11147883 tggtttaacagccaaaacaaacggaggggggtaattgactaacgtttgacaatttca 11147827  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 21224379 - 21224327
Alignment:
Q  416 tttaacagccaaaataaatggag-gggtaattgactaatgtttgacaatttca 467  Q
    |||||||||||||||||| |||| ||| |||||||||| ||||||||||||||    
T  21224379 tttaacagccaaaataaacggagaggggaattgactaaggtttgacaatttca 21224327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 21225932 - 21225880
Alignment:
Q  416 tttaacagccaaaataaatggag-gggtaattgactaatgtttgacaatttca 467  Q
    |||||||||||||| ||| |||| |||||||||||||| ||||||||||||||    
T  21225932 tttaacagccaaaacaaacggagagggtaattgactaaggtttgacaatttca 21225880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 620605 - 620527
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgaggg-ttttgaagttttctaaaa 491  Q
    |||||||||||||| ||| |||||||  ||||||||||| ||||| |||||||| | ||| ||||||||||| ||||||    
T  620605 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaa 620527  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 621536 - 621614
Alignment:
Q  416 tttaacagccaaaataaatggagggg--taattgactaatgtttgacaatttcacgaggg-ttttgaagttttctaaaa 491  Q
    |||||||||||||| ||| |||||||  ||||||||||| ||||| |||||||| | ||| ||||||||||| ||||||    
T  621536 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaa 621614  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 49681397 - 49681320
Alignment:
Q  416 tttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgaggg--ttttgaagttttctaaaa 491  Q
    |||||||||||||| ||| ||||||| ||||| ||||  |||||||||||||| |||||  ||||||||||||||||||    
T  49681397 tttaacagccaaaacaaacggaggggataattaactagcgtttgacaatttca-gaggggtttttgaagttttctaaaa 49681320  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 11148094 - 11148176
Alignment:
Q  413 tggtttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgaggg-ttttgaagttttctaaaagt 493  Q
    |||||||||| |||||| ||| ||||||| |||||||||||  |||||||||||||  |||| |||||||||||  |||||||    
T  11148094 tggtttaacaaccaaaacaaacggagggggtaattgactaacatttgacaatttcataagggtttttgaagtttcttaaaagt 11148176  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 21226524 - 21226585
Alignment:
Q  416 tttaacagccaaaataaatggagggg-taattgactaatgtttgacaatttcacgagggtttt 477  Q
    ||||| |||||||| ||| ||||||| |||||||||||||||| ||||||||| |||||||||    
T  21226524 tttaatagccaaaacaaacggagggggtaattgactaatgtttaacaatttca-gagggtttt 21226585  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 484
Target Start/End: Complemental strand, 31632517 - 31632446
Alignment:
Q  414 ggtttaacagccaaaataaatggaggggt--aattgactaatgtttgacaatttcacgagggttttgaagttt 484  Q
    |||||||||||| ||| ||| |||||||   |||||||||| |||||||||||| | ||||||||||||||||    
T  31632517 ggtttaacagcccaaacaaacggaggggggcaattgactaacgtttgacaattt-aggagggttttgaagttt 31632446  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 49682033 - 49682102
Alignment:
Q  416 tttaacagccaaaataaatgga-ggggtaattgactaatgtttgacaatttcacgagggttttgaagttt 484  Q
    ||||| |||||||||||||||| ||||||||||||||| | |||| ||||||| | |  |||||||||||    
T  49682033 tttaatagccaaaataaatggagggggtaattgactaacgattgataatttcaggggatttttgaagttt 49682102  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 30710279 - 30710356
Alignment:
Q  416 tttaacagccaaaataaatgga--ggggtaattgactaatgtttgacaatttcacgagggttttgaagttttctaaaa 491  Q
    |||||||||||||| |||  ||  ||||||||||||||| ||||| |||||||| | || ||||||||||| ||||||    
T  30710279 tttaacagccaaaacaaacagatgggggtaattgactaacgtttggcaatttcagggggtttttgaagtttcctaaaa 30710356  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 27400 - 27453
Alignment:
Q  413 tggtttaacagccaaaataaatgga-ggggtaattgactaatgtttgacaattt 465  Q
    ||||||||||||||||| ||| ||| ||||||||||||||  ||||||||||||    
T  27400 tggtttaacagccaaaacaaacggagggggtaattgactatcgtttgacaattt 27453  T

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