View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_high_5 (Length: 487)
Name: NF13755_high_5
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 8355129 - 8354629
Alignment:
| Q |
17 |
acttggaatgcaaacccctgaaatttatatttgtatgacttataaaacatataaaatcatcctttttgagt------------------actataagaaa |
98 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8355129 |
acttggaatgcaaacccctgaaatttatatttatatgacttataaaacatataaaatcatcctttttgagtttaaaaaaaaataaaaatactataagaaa |
8355030 |
T |
|
| Q |
99 |
gggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatccgagtaat--tcaaggataggatag-----ataagtaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
8355029 |
gggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatccgagtaatattcaaggataggataggatagataagtaa |
8354930 |
T |
|
| Q |
192 |
tcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaacaaaacagttatccatgatatatctat------------ |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8354929 |
tcttattaaaatagatagactagggtgtatttttgaactgagtct--tacaacaacaaaaacaaaacagttatccatgatatatatatatatatatatat |
8354832 |
T |
|
| Q |
280 |
cattcccaaagcaaaaggttttaggtt-----gcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcacaagacgctgaaa |
374 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8354831 |
cattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcaaaagacgctgaaa |
8354732 |
T |
|
| Q |
375 |
agcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattcctcct |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354731 |
agcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattcctcct |
8354632 |
T |
|
| Q |
475 |
atg |
477 |
Q |
| |
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||| |
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| T |
8354631 |
atg |
8354629 |
T |
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