View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13755_high_8 (Length: 422)

Name: NF13755_high_8
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13755_high_8
NF13755_high_8
[»] chr1 (4 HSPs)
chr1 (159-417)||(6419397-6419655)
chr1 (311-413)||(6403206-6403308)
chr1 (20-91)||(6419236-6419307)
chr1 (303-347)||(6414163-6414206)
[»] chr4 (6 HSPs)
chr4 (29-82)||(19689888-19689941)
chr4 (29-82)||(19700473-19700526)
chr4 (34-63)||(25593681-25593710)
chr4 (22-63)||(38704665-38704706)
chr4 (31-63)||(1620909-1620941)
chr4 (28-68)||(9729974-9730014)
[»] chr6 (2 HSPs)
chr6 (28-82)||(25022838-25022892)
chr6 (30-82)||(13691346-13691398)
[»] chr3 (3 HSPs)
chr3 (30-63)||(26230383-26230416)
chr3 (31-63)||(8113754-8113786)
chr3 (31-63)||(24228471-24228503)
[»] chr2 (1 HSPs)
chr2 (29-70)||(14327603-14327644)
[»] chr8 (1 HSPs)
chr8 (30-82)||(40665918-40665970)
[»] chr7 (1 HSPs)
chr7 (28-64)||(36780581-36780617)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 159 - 417
Target Start/End: Original strand, 6419397 - 6419655
Alignment:
Q  159 catatttaactctctaatttaaagtttcaacccattcaaattcttctgcacctaggttgacctatgatatagactaaaatgaatgtttatgctcaacaca 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6419397 catatttaactctctaatttaaagtttcaacccattcaaattcttctgcacctaggttgacctatgacatagactaaaatgaatgtttatactcaacaca 6419496  T
Q  259 aagtactacattaataaaatgtttgtactgttctgaaacatctctctaccattcatcttcctcgtgaaccgttaaaagggtttaaagccatatacccttc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6419497 aagtactacattaataaaatgtttgtactgttctgaaacatctctctaccattcatcttcctcgtgaaccgttaaaagggtttaaagccatatacccttc 6419596  T
Q  359 ttttctttttcttcctcaaacaaaaagcttgcaactttgaaccatttccactctctgct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6419597 ttttctttttcttcctcaaacaaaaagcttgcaactttgaaccatttccactctctgct 6419655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 6403206 - 6403308
Alignment:
Q  311 tcatcttcctcgtgaaccgttaaaagggtttaaagccatatacccttcttttctttttcttcctcaaacaaaaagcttgcaactttgaaccatttccact 410  Q
    |||| |||||| || || |||||| || ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6403206 tcattttcctcttgtactgttaaagggttttaaagtcatatacccttcttgtcttttccttcctcaaacaaaaagcttgcaactttgaaccatttccact 6403305  T
Q  411 ctc 413  Q
    |||    
T  6403306 ctc 6403308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 6419236 - 6419307
Alignment:
Q  20 tcttatacataagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagttgtcctaaa 91  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6419236 tcttatacgtaaggcttaaatatatttttaatccatataaatatttcaagtcttcgatttagttgtcctaaa 6419307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 6414163 - 6414206
Alignment:
Q  303 tctaccattcatcttcctcgtgaaccgttaaaagggtttaaagcc 347  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||    
T  6414163 tctacctttcatcttcctcgtgaactgtt-aaagggtttaaagcc 6414206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 19689941 - 19689888
Alignment:
Q  29 taagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagt 82  Q
    |||||||||||||| ||||| |||||||||||||| |||| | |||||||||||    
T  19689941 taagggttaaatatgtttttgatccatataaatatgtcaatttttcgatttagt 19689888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 19700526 - 19700473
Alignment:
Q  29 taagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagt 82  Q
    |||||||||||||| ||||| |||||||||||||| |||| | |||||||||||    
T  19700526 taagggttaaatatgtttttgatccatataaatatgtcaatttttcgatttagt 19700473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 25593681 - 25593710
Alignment:
Q  34 gttaaatatatttttaatccatataaatat 63  Q
    ||||||||||||||||||||||||||||||    
T  25593681 gttaaatatatttttaatccatataaatat 25593710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 38704665 - 38704706
Alignment:
Q  22 ttatacataagggttaaatatatttttaatccatataaatat 63  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  38704665 ttataaataagggttaaatatatttttagtccctataaatat 38704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 1620941 - 1620909
Alignment:
Q  31 agggttaaatatatttttaatccatataaatat 63  Q
    ||||||||||||||||||||||| |||||||||    
T  1620941 agggttaaatatatttttaatccttataaatat 1620909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 9729974 - 9730014
Alignment:
Q  28 ataagggttaaatatatttttaatccatataaatatttcaa 68  Q
    ||||||||||||||||||||| |||| ||||||||| ||||    
T  9729974 ataagggttaaatatatttttgatccctataaatatatcaa 9730014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 25022838 - 25022892
Alignment:
Q  28 ataagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagt 82  Q
    ||||||||||||||||||||| |||| ||||||||| |||| | |||| ||||||    
T  25022838 ataagggttaaatatatttttgatccctataaatatgtcaacttttcgttttagt 25022892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 13691346 - 13691398
Alignment:
Q  30 aagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagt 82  Q
    ||||||||||||||||||| |||| ||||||||| |||| | |||| ||||||    
T  13691346 aagggttaaatatatttttgatccttataaatatatcaacttttcgttttagt 13691398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 26230416 - 26230383
Alignment:
Q  30 aagggttaaatatatttttaatccatataaatat 63  Q
    |||||||||||||||||||| |||||||||||||    
T  26230416 aagggttaaatatatttttagtccatataaatat 26230383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 8113754 - 8113786
Alignment:
Q  31 agggttaaatatatttttaatccatataaatat 63  Q
    ||||||||||||||||||||||| |||||||||    
T  8113754 agggttaaatatatttttaatccttataaatat 8113786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 24228471 - 24228503
Alignment:
Q  31 agggttaaatatatttttaatccatataaatat 63  Q
    ||||||||||||||||||||||| |||||||||    
T  24228471 agggttaaatatatttttaatccctataaatat 24228503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 14327603 - 14327644
Alignment:
Q  29 taagggttaaatatatttttaatccatataaatatttcaagt 70  Q
    |||||||||||||| ||||| |||||||||||||| ||||||    
T  14327603 taagggttaaatatgtttttgatccatataaatatgtcaagt 14327644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 40665918 - 40665970
Alignment:
Q  30 aagggttaaatatatttttaatccatataaatatttcaagtcttcgatttagt 82  Q
    |||||||||||||||||||| ||| ||||||||| |||| | |||| ||||||    
T  40665918 aagggttaaatatatttttagtccttataaatatgtcaacttttcgttttagt 40665970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 36780581 - 36780617
Alignment:
Q  28 ataagggttaaatatatttttaatccatataaatatt 64  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  36780581 ataagggttaaatatatttttgatccctataaatatt 36780617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University