View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_12 (Length: 386)
Name: NF13755_low_12
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 39764023 - 39764389
Alignment:
| Q |
17 |
attcctcttctgtatgctaatgagaatgttggtgcagtaaagaagatggttagaaaggagaatatggatcatgaagatggtcgaattactgcaaatttgt |
116 |
Q |
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| T |
39764023 |
attcctcttctgtatgctaatgagaatgttggtgcagtaaagaagatggttagaaaggagaatatggatcatgaagatggtcgaattactgcaaatttgt |
39764122 |
T |
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| Q |
117 |
ttactgtctccaaggaacaactgaaatttcttgcagctcatggtttggaacaatggtggccaaatgatt-agaacttcagcaaactatccgtgatggaaa |
215 |
Q |
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| T |
39764123 |
ttactgtctccaaggaacaactgaaatttcttgcagctcatggtttggaacaatagtggccaaatgatttagaacttcagcaaactatccgtgatggaaa |
39764222 |
T |
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| Q |
216 |
actcataagcaggcaaattaaatctctatacaccacttcgccttgggaagtaacaaaagggtcaaatagttcttttctttcacttgccatgcgtcttgca |
315 |
Q |
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| T |
39764223 |
actcataagcaggcaaattaaatctctatacaccgcttcgccttgggaagtaacaaaagggtcaaatagttcttttctttcacttgccatgcgtcttgca |
39764322 |
T |
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| Q |
316 |
gaaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaatctc |
382 |
Q |
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| T |
39764323 |
gaaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaatctc |
39764389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 39764617 - 39764748
Alignment:
| Q |
143 |
tttcttgcagctcatggtttggaacaatggtggccaaatgatt-agaacttcagcaaactatccgtgatggaaaactcataagcaggcaaattaaatctc |
241 |
Q |
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| T |
39764617 |
tttctttcagctcacggtttgcaacaatggtggccaagtgatgcagaacttcagcaaactattcatgatagcaaactcataagcaggcgaattggatctt |
39764716 |
T |
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| Q |
242 |
tatacaccacttcgccttgggaagtaacaaaa |
273 |
Q |
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| T |
39764717 |
tatacaccaatacaccttgggacgtaacaaaa |
39764748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 39757726 - 39757787
Alignment:
| Q |
317 |
aaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaa |
378 |
Q |
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|||| ||||||||| ||||||||||||||||| | ||| ||| |||| ||||||||||||| |
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| T |
39757726 |
aaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaa |
39757787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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