View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_18 (Length: 298)
Name: NF13755_low_18
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 36422674 - 36422842
Alignment:
| Q |
12 |
tcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaaagaaccgttttcaatcttcaaatccaatccacaaaccatcct |
111 |
Q |
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| T |
36422674 |
tcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaaagaaccgttttcaatcttcaaatccaatccacaaaccatcct |
36422773 |
T |
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| Q |
112 |
tctccactcgccatcaacaaccaaaccatgaatccgatgaacctcgccaccctttagaccctttaacca |
180 |
Q |
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| T |
36422774 |
tctccactcgccgtcaacaaccaaaccatgaatccgatgaacctcgccaccctttagaccctctaacca |
36422842 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 32974226 - 32974332
Alignment:
| Q |
180 |
aacgcaactgttctccatgtatatcatgagacccatcaccctcatgttccctctaccaacggacaccaagtcaaccatgaccctcccgctactcatcgct |
279 |
Q |
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||||||||||||| |||||| | |||||| |||||| |||||||| |||| ||| |||||| ||||| ||||||||||| || ||||| ||| || || |
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| T |
32974226 |
aacgcaactgttcaccatgtttctcatgaaacccataaccctcattttccttcttccaacgttcaccatgtcaaccatgaacccaccgctcctcctctct |
32974325 |
T |
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| Q |
280 |
cctccaa |
286 |
Q |
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| T |
32974326 |
cctccaa |
32974332 |
T |
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