View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_19 (Length: 292)
Name: NF13755_low_19
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 30994981 - 30994733
Alignment:
| Q |
14 |
gcaagttaatcaccgcaaaacaaattcaaaggaaaaaagtgtaatgaatatacatacataccttgtgagaagtcaagaatgaaaatcggcgaatgagagt |
113 |
Q |
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| T |
30994981 |
gcaagttaatcaccgcaaaacaaattcaaagaaaaaaagtgtaatgaatatacatacataccttgtgagaagtcaagaatgaaaatcggcgaatgagagt |
30994882 |
T |
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| Q |
114 |
ttctaaaaataggtgaaccctaaaaagacaataatcgggagtattcgaagagtttatttgagctgaatgaaattctaaagtcaatgtttgaacctccctc |
213 |
Q |
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| T |
30994881 |
ttctaaaaataggtgaaccctaaaaagacaataatcgggagtattcgaagagtttatttgagctgaatgaaattctaaagtcaatgtttgaacctccctc |
30994782 |
T |
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| Q |
214 |
tttatttctttgactttcactccttcttccctccaatctttattggattata |
265 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
30994781 |
tttatttctttgactttcattc---cttccctccaatctttattggattata |
30994733 |
T |
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