View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_22 (Length: 266)
Name: NF13755_low_22
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 21672349 - 21672584
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccacca |
111 |
Q |
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| T |
21672349 |
tatactatacacagtctcttttcaactcggcggtgacggcggcatacaccagcaacctgacgttattgtgacaacatcatggcgtaagatttaaccatca |
21672448 |
T |
|
| Q |
112 |
cgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||| |||| |
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| T |
21672449 |
tgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgatatcttcatagtcgctgttgttttgggatcttcaacctcaaagaag |
21672548 |
T |
|
| Q |
212 |
ctagatcttaatcattgttgttgttttggagctttt |
247 |
Q |
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| T |
21672549 |
ctagatcttaatcattgttcttgttttggaggtttt |
21672584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 39406753 - 39406527
Alignment:
| Q |
10 |
attatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccac |
109 |
Q |
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| T |
39406753 |
attatactatacacggtctcttttcaactcggcggcgactgcggcgtacaccggcaacctgacattattgtgatagcatcagggcgtaggatttaaccat |
39406654 |
T |
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| Q |
110 |
cacgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagga |
209 |
Q |
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| T |
39406653 |
cacaaagtggttattttcgatctcagtgatgaagctttgctcgttcgaaattgtgacatcttcatagtcattgttgttttgggaccttcatcctcaagga |
39406554 |
T |
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| Q |
210 |
agctagatcttaatcattgttgttgtt |
236 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
39406553 |
agctagattttaatcattgttgttgtt |
39406527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 50430994 - 50430762
Alignment:
| Q |
12 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggc-gtaggatgtaaccacc |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||| | |||| ||| ||||||| ||| |||||||| ||||||| |||| | | |
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| T |
50430994 |
tatactatacaccgtctcttttcaactcggcggcgacggcggcgtacacaaacaacttgacgttactgtgacaacatcaggggtgtaggatttaacaatc |
50430895 |
T |
|
| Q |
111 |
acgaagtggttattttcgatctcagtgatgaagtttt--gctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaagg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||| | |
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| T |
50430894 |
acgaagtggttattttcgatctcagtgatgaagttttttgctccttcaaaattacgacatcttcatagtcgttgttgttttgggaacttgatcctcaaag |
50430795 |
T |
|
| Q |
209 |
aagctagatcttaatcattgttgttgttttgga |
241 |
Q |
| |
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|||||| ||||||||| |||||||||||||||| |
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| T |
50430794 |
aagctaaatcttaatcgttgttgttgttttgga |
50430762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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