View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_3 (Length: 570)
Name: NF13755_low_3
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 552
Target Start/End: Original strand, 10901701 - 10902234
Alignment:
| Q |
19 |
tcctcttgctgctgttaatgaaacaatgcccatatgtttagtaataaaattaaatcnnnnnnnnngtatgcgtgagacagcgctttcaccttagaccgtg |
118 |
Q |
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| T |
10901701 |
tcctcttgctgctgttaatgaaacaatgctcatatgtttagtaataaaattaaatctaaaaaaaagtatgtgtgcgacagtgctttcaccgtagaccgtg |
10901800 |
T |
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| Q |
119 |
cttgaaaataaataaaagtgctatcaccgacaatggtgcctttaaaatcaatcttccctttgctattatacaccttcattgcacatgcttccatcttcat |
218 |
Q |
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| T |
10901801 |
cttgaaaataaataaaagtgctatcaccgacaatggtgcctttaaaatcaatcttccctttgctattatacaccttcattgcacatgcttccatcttcat |
10901900 |
T |
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| Q |
219 |
ggtataacctttttcaagccactgtaaaagacttatgaaattgcttctcatagttgggacataaagcatatccaagatgaatgattttgtaccatcattc |
318 |
Q |
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| T |
10901901 |
ggtataacctttttcaagcaactgtccaagacttatgagattgcttctcatagttgggacataaagcatatccaagatgaatgattctgtaccatcattc |
10902000 |
T |
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| Q |
319 |
cttcgaatcttaacctttctaatcccttttgcgttaaccataatgttgcatgcaaattttatctttcccttaactgactcgtttagattaatataaaacc |
418 |
Q |
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| T |
10902001 |
cttcgaatcttaacctttctaatcccttttgcgttaaccataatgttgtatgcaaatcttatctttctcttaactgactcatttagattaatataaaacc |
10902100 |
T |
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| Q |
419 |
aaattttcttgccactcatgtgatttgagaaacctgtatgcaaataccattggtcatcatcttcacctttgatagtagccatcaataaaactccatcagc |
518 |
Q |
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| T |
10902101 |
aatttttcttgccactcatgtgatttgagaaacctgtatccaaataccatcggtcataatcttcacctttgatagtagccattaataaaactccaccagc |
10902200 |
T |
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| Q |
519 |
atcagattcatcttcattgtaggaaaactgttct |
552 |
Q |
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| T |
10902201 |
atcagattcatcttcattgtaggaaaactgttct |
10902234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 199 - 362
Target Start/End: Original strand, 10908757 - 10908920
Alignment:
| Q |
199 |
gcacatgcttccatcttcatggtataacctttttcaagccactgtaaaagacttatgaaattgcttctcatagttgggacataaagcatatccaagatga |
298 |
Q |
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| T |
10908757 |
gcacatgcttccatcttcatggtataacctttttcaagcaactgtccaagacttatgagattgcttctcatagttgggacaaaaagcatatctgagatga |
10908856 |
T |
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| Q |
299 |
atgattttgtaccatcattccttcgaatcttaacctttctaatcccttttgcgttaaccataat |
362 |
Q |
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| T |
10908857 |
atgattctataccatcattccttcgaatcttaacctttctgatcccttttgcgttaaccataat |
10908920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 358 - 508
Target Start/End: Original strand, 10911536 - 10911686
Alignment:
| Q |
358 |
ataatgttgcatgcaaattttatctttcccttaactgactcgtttagattaatataaaaccaaattttcttgccactcatgtgatttgagaaacctgtat |
457 |
Q |
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| T |
10911536 |
ataatgttgtatgaaaatcctatctttctcttagatgactcttttagattaatataaaaccaatttttcttgccactcatgtgatttgagcaacctgtat |
10911635 |
T |
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| Q |
458 |
gcaaataccattggtcatcatcttcacctttgatagtagccatcaataaaa |
508 |
Q |
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| T |
10911636 |
ccaaataccattgttcatcatcctcacctttgatagcagccatcagtaaaa |
10911686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 10908695 - 10908756
Alignment:
| Q |
116 |
gtgcttgaaaataaataaaagtgctatcacc--gacaatggtgcctttaaaatcaatcttcc |
175 |
Q |
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| T |
10908695 |
gtgcttgaaaataaataaaagcgctatcaccttgacaatggtgccttcaaaatcaatcttcc |
10908756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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