View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_5 (Length: 508)
Name: NF13755_low_5
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 33313474 - 33313921
Alignment:
| Q |
1 |
agctcatatgttttgtttttcggtctatctcatttagttttgagattgaatacatctcaacactacatctagatgagaattgcatctatttaatgaacca |
100 |
Q |
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| T |
33313474 |
agctcatatgttttgtttttcggtctatctcatttagttttgagattgaatacatcttaacactacatctagatgagaattgcatctatttaatgaacca |
33313573 |
T |
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| Q |
101 |
tttgacgcattgatacttgggggtattcaagtatttgtgatgcccactaataagttcatttgccatagttataacaaattgaactaactacaaactaact |
200 |
Q |
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| T |
33313574 |
tttgacgcattgatacttgggggtattcaagtatttgtgatgcccactaataagttcatttgccatagttataacaaattgaactaactacaaactaact |
33313673 |
T |
|
| Q |
201 |
aggtgggaaaatacattgtacaatagggcaaggtaataagcaaattgtattctcgaccaacacacacgtttggtgtaaaatgccatgtgaagccataatg |
300 |
Q |
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| T |
33313674 |
aggtgggaaaatacattgtacaatagggcatggtaataagcaaattgtattctcgaccaacacacacgtttggtgtaaaatgccatgtgaagccataatg |
33313773 |
T |
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| Q |
301 |
atttgaaatgttaagagatagtaagtagttattcataagcattatcactttgcattgtatgaatgggaacaccaaactgtgtttttgtcttatgatagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
33313774 |
atttgaaatgttaagagatagtaagtagttattcataagcattatcactttgcattgtatgaatgggaacaccaaattgtgtttttgtctcatgatagaa |
33313873 |
T |
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| Q |
401 |
tacccgaaaaattgagaaccattcagacctgtttttcataaactaaat |
448 |
Q |
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| T |
33313874 |
tacccgaaaaattgagaaccattctgacctgtttttcataaactaaat |
33313921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35883186 - 35883261
Alignment:
| Q |
1 |
agctcatatgttttgtttttcggtctatctcatttagttttgagattgaatacatctcaacactacatctagatga |
76 |
Q |
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|||||||||||||||||| | ||||| ||||||||||||| | | ||| |||||||| || || ||||||||||| |
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| T |
35883186 |
agctcatatgttttgtttcttggtctttctcatttagtttcgggtttggatacatcttaatcctgcatctagatga |
35883261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 35884308 - 35884345
Alignment:
| Q |
101 |
tttgacgcattgatacttgggggtattcaagtatttgt |
138 |
Q |
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| T |
35884308 |
tttgatgcattgatacttggtggtattcaagtatttgt |
35884345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10211106 - 10211031
Alignment:
| Q |
1 |
agctcatatgttttgtttttcggtctatctcatttagttttgagattgaatacatctcaacactacatctagatga |
76 |
Q |
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||||||||||| || ||| | ||||||||||||||||||| | | ||| ||||||||||||| | ||||| ||||| |
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| T |
10211106 |
agctcatatgtgttatttcttggtctatctcatttagtttcgggtttggatacatctcaacagtgcatcttgatga |
10211031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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