View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13755_low_8 (Length: 456)

Name: NF13755_low_8
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13755_low_8
NF13755_low_8
[»] chr4 (2 HSPs)
chr4 (10-439)||(22015937-22016366)
chr4 (138-174)||(30871763-30871799)
[»] chr2 (3 HSPs)
chr2 (268-371)||(40059108-40059211)
chr2 (268-371)||(40077136-40077239)
chr2 (268-371)||(40085046-40085149)
[»] chr8 (1 HSPs)
chr8 (140-172)||(34489298-34489330)
[»] chr1 (2 HSPs)
chr1 (141-176)||(47126339-47126374)
chr1 (139-175)||(5243300-5243336)
[»] chr6 (2 HSPs)
chr6 (138-175)||(2002150-2002187)
chr6 (140-172)||(4323827-4323859)
[»] chr5 (1 HSPs)
chr5 (140-177)||(35053681-35053718)
[»] chr3 (3 HSPs)
chr3 (143-176)||(25204150-25204183)
chr3 (298-371)||(44352747-44352820)
chr3 (139-175)||(26643224-26643260)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 22015937 - 22016366
Alignment:
Q  10 attatactgacaagccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22015937 attatactgacaagccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatc 22016036  T
Q  110 ttctatctatgaagcacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttctaagcttttatgtttgaacactcacacaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22016037 ttctatctatgaagcacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttttaagcttttatgtttgaacactcacacaa 22016136  T
Q  210 tgcaatgtaagaaatagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggttcgtgcaggttccagaaaaca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22016137 tgcaatgtaagaaatagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggctcgtgcaggttccagaaaaca 22016236  T
Q  310 taagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016237 taagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatc 22016336  T
Q  410 aaacacaaattgaaaaagtactgtatatct 439  Q
    ||||||||||||||||||||||||||||||    
T  22016337 aaacacaaattgaaaaagtactgtatatct 22016366  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 30871799 - 30871763
Alignment:
Q  138 tggacacaccttcaatctaaagtgtcggtgctacata 174  Q
    |||||||||| |||||||||||||| |||||||||||    
T  30871799 tggacacaccatcaatctaaagtgttggtgctacata 30871763  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 40059211 - 40059108
Alignment:
Q  268 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 367  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40059211 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40059112  T
Q  368 tcta 371  Q
    ||||    
T  40059111 tcta 40059108  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 40077239 - 40077136
Alignment:
Q  268 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 367  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40077239 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 40077140  T
Q  368 tcta 371  Q
    ||||    
T  40077139 tcta 40077136  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 40085149 - 40085046
Alignment:
Q  268 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 367  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40085149 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40085050  T
Q  368 tcta 371  Q
    ||||    
T  40085049 tcta 40085046  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 34489298 - 34489330
Alignment:
Q  140 gacacaccttcaatctaaagtgtcggtgctaca 172  Q
    |||||||||||||||||||||||||||||||||    
T  34489298 gacacaccttcaatctaaagtgtcggtgctaca 34489330  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 47126339 - 47126374
Alignment:
Q  141 acacaccttcaatctaaagtgtcggtgctacatagt 176  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47126339 acacaccttcaatctaaagtgtcggtgatacatagt 47126374  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 5243300 - 5243336
Alignment:
Q  139 ggacacaccttcaatctaaagtgtcggtgctacatag 175  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5243300 ggacacaccttcaatcagaagtgtcggtgctacatag 5243336  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 2002187 - 2002150
Alignment:
Q  138 tggacacaccttcaatctaaagtgtcggtgctacatag 175  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  2002187 tggacaaaccttcaatctaatgtgtcggtgctacatag 2002150  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 4323859 - 4323827
Alignment:
Q  140 gacacaccttcaatctaaagtgtcggtgctaca 172  Q
    |||||||||||||||||||||||| ||||||||    
T  4323859 gacacaccttcaatctaaagtgtcagtgctaca 4323827  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 35053718 - 35053681
Alignment:
Q  140 gacacaccttcaatctaaagtgtcggtgctacatagtc 177  Q
    |||||||||||||||  |||||||||||||||||||||    
T  35053718 gacacaccttcaatcagaagtgtcggtgctacatagtc 35053681  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 25204183 - 25204150
Alignment:
Q  143 acaccttcaatctaaagtgtcggtgctacatagt 176  Q
    |||| |||||||||||||||||||||||||||||    
T  25204183 acacattcaatctaaagtgtcggtgctacatagt 25204150  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 44352747 - 44352820
Alignment:
Q  298 ttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 371  Q
    |||||||||||||| || ||||| ||||| ||||| || ||||||| | | ||||||||  |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatcta 44352820  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 26643260 - 26643224
Alignment:
Q  139 ggacacaccttcaatctaaagtgtcggtgctacatag 175  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  26643260 ggacaaaccttcaatctgaagtgtcggtgctacatag 26643224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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