View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13755_low_9 (Length: 427)
Name: NF13755_low_9
Description: NF13755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13755_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 39992009 - 39991774
Alignment:
| Q |
8 |
tgagatgaagataaacaaccctaagcaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaa |
107 |
Q |
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| T |
39992009 |
tgagatgaagataaacaaccctaagaaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaa |
39991910 |
T |
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| Q |
108 |
atatgctgnnnnnnntaagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgttacattaaacaa |
207 |
Q |
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| T |
39991909 |
atatgctgaaaaaa-taagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgtgacaataaacaa |
39991811 |
T |
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| Q |
208 |
aaccaactcactcataagattgaatgaaaattctagg |
244 |
Q |
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| T |
39991810 |
aaccaactcactcataagattgaatgaaaattctagg |
39991774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 39991695 - 39991607
Alignment:
| Q |
322 |
gtttaccaattatcaccaatatagttaaatttaacttttttcacaaaagggtacctttctaacttcataattcacttatatgagaaaag |
410 |
Q |
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| T |
39991695 |
gtttaccaattatcaccaatatagttaaatttaacttttttcacaaaagggtaccttactaacttcataattcactcatatgagaaaag |
39991607 |
T |
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