View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13756_high_1_N (Length: 396)
Name: NF13756_high_1_N
Description: NF13756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13756_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 44714965 - 44714617
Alignment:
| Q |
28 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
127 |
Q |
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| T |
44714965 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
44714866 |
T |
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| Q |
128 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
227 |
Q |
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| T |
44714865 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
44714766 |
T |
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| Q |
228 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
327 |
Q |
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| T |
44714765 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
44714666 |
T |
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| Q |
328 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgat |
376 |
Q |
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| T |
44714665 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgat |
44714617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 28 - 374
Target Start/End: Complemental strand, 44704262 - 44703916
Alignment:
| Q |
28 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
127 |
Q |
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| T |
44704262 |
gagtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagtgtgaagaggtcatctatgatcggacgagcacgt |
44704163 |
T |
|
| Q |
128 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
227 |
Q |
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| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||| |||||| |||||||||| ||||||| |
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| T |
44704162 |
actggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgttgcacggtttttaacggaatgaagg |
44704063 |
T |
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| Q |
228 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
327 |
Q |
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||| || ||||||||| |||| |||||||||||||| |||||| || |||||| || |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44704062 |
aaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgc |
44703963 |
T |
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| Q |
328 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatg |
374 |
Q |
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||||| |||||||| |||||||||||||||| |||| |||||||| |
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| T |
44703962 |
ctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatg |
44703916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 2278056 - 2278242
Alignment:
| Q |
137 |
acagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaaggaaattgtgg |
236 |
Q |
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||||||||||| ||||||||||||||| |||||||| || |||||||||||| | ||| | | || || ||||||| || | ||| || | |||| |
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| T |
2278056 |
acagtggaggtacacgataacccaggtgtggagtacctcattgaagggtgtttcccacaaagatgctgtaagatttttaatgccacaaagaaattagtgg |
2278155 |
T |
|
| Q |
237 |
ctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatg |
323 |
Q |
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|||||||| |||||||||||||||||| || || || ||||||||| ||||||||| ||||||||| | |||| |||||||| |
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| T |
2278156 |
ctgagattcgtcgtaaagtggaccccaccactagtgttatgcttgggaaagaagtgttcatgctttgtgttcaacctgattttgatg |
2278242 |
T |
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