View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13756_high_8 (Length: 307)

Name: NF13756_high_8
Description: NF13756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13756_high_8
NF13756_high_8
[»] chr2 (1 HSPs)
chr2 (9-307)||(22155007-22155305)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 22155007 - 22155305
Alignment:
Q  9 agcagagataatcagaagcgacgagagggtcttgatgaagaagtagtccaggatccacgatcaacacgtctggctagcatcagacaacaccctgatgaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22155007 agcagagataatcagaagcgacgagagggtcttgatgaagaagtagtccaggatccacgatcaacacgtctggctagcatcagacaacaccctgatgaaa 22155106  T
Q  109 atgagcagggattctatagaaaagagcatgatggaaagcaagatcccgaaagaaatcacatggtacttagaggtagagatggatcatacccttacaagga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22155107 atgagcagggattctatagaaaagagcatgatggaaagcaagatcccgaaagaaatcacatggtacttagaggtagagagggatcatacccttacaagga 22155206  T
Q  209 ccggcatcgtagcttggcccatcaattgcatacaaatactgacggatttgataggcaaaaagatagggacagttctgacatggattgggcaaggagaga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22155207 ccggcatcgtagcttggcccatcaattgcatacaaatactgacggatttgataggcaaaaagatagggacagttctgacatggattgggcaaggagaga 22155305  T

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