View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13757_low_2 (Length: 227)
Name: NF13757_low_2
Description: NF13757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13757_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48681115 - 48680889
Alignment:
| Q |
1 |
acacagaaagtaacaagatcagaaaacatacttcgctgttatttcattctttagtagggtaattatacatgtaattcactgtgaacttctttatatacaa |
100 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48681115 |
acacaaaaagtaacaagatcagaaaatataattcgctgttatttcattctttagtagggtaattatacatgtaattcactgtgaacttctttatatacaa |
48681016 |
T |
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| Q |
101 |
ttgaatagtaattttcttgcctgtttgaatttaagtctgttaaatttggttatgtagcataagtcagatgttttgatatagnnnnnnncgttttctttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48681015 |
ttgaatagtaattttcttgcctgtttgaatttaagtctgttaaatttggttatgtagcataagtcagatgttttgatatagtttttttcgttttctttct |
48680916 |
T |
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| Q |
201 |
ttctatcttcagtgaaactcgagtagc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48680915 |
ttctatcttcagtgaaactcgagtagc |
48680889 |
T |
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